Detailed information of component protein


Summary

Component ID T6CP015741
Component protein type TssI
T6SS ID (Type) T6SS01264 experimental (Type i3)
Strain Serratia marcescens RM66262
Replicon chromosome
Sequence Protein sequence (643 a.a.); Nucleotide sequence (1929 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) RT90_RS02620
Coordinate (Strand) 563798..565726 (-)
NCBI ID 727191838
RefSeq NZ_JWLO01000001
Uniprot ID A0A2V4G1N9_SERMA
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 1.9e-89 25..330
Phage_base_V PF04717.14 2.5e-14 385..452
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-642 MLDRIIAHTPLGQEQLLFRSLDGIEALSTPFDFSIELLSTDARLDRKALLGQPLTLEIPTQGFLSAPRYLNGKITAIAVSSEEIGGTRYAVYNLHVQPDLWPMTKDRNFRIFQEQTVPQIVKTLLAEHNVQLEDQLTGDYRLWGYCVQYNESSFNFISRLMELEGIYYYFKHEMGKHTLVLGDAPHHHQPYPGYEMIPYHLTPSGGSTSEEGISQWTLSDRVTPGIYSLDDYDFRKPNAWLFQARQNPVSPTPGQIDVYDWPGRYTEHQQGEFYARVRQEAWQAEHQQIRGTATAMGIAPGSTFTLYNAPHADDNREYLTLQANYHLKENRYASGDDQSSEHRIDFTVLPADVPWHPPQQATWPKTHGPQTARVVGPAGESIWTDKYGRIKVKFHWDRFGPKDDGSSCWVRVSSAWAGQGYGGVQIPRVNDEVVVDFINGDPDRPIVTGRVYNEASMPPWALPAAATQMGFMSRSKDGTADNANALRFEDKAGAEQVWIQAERNMDTQVKNDESHSIANDHTHLVGGNQIKRVVLNQASGVKGEASALTGKTRSDAVVNAFTLGSGESLRLECGESVIELLANGQINITGTSFNITVKEDGEINTGGQLDLNQPGGAARTAAPGGGHQAAIQSAVDQLFPKE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9936 - -


  Protein sequence: 643 a.a.    

>T6CP015741 NZ_JWLO01000001:c565726-563798 [Serratia marcescens] [TssI]
MLDRIIAHTPLGQEQLLFRSLDGIEALSTPFDFSIELLSTDARLDRKALLGQPLTLEIPTQGFLSAPRYLNGKITAIAVS
SEEIGGTRYAVYNLHVQPDLWPMTKDRNFRIFQEQTVPQIVKTLLAEHNVQLEDQLTGDYRLWGYCVQYNESSFNFISRL
MELEGIYYYFKHEMGKHTLVLGDAPHHHQPYPGYEMIPYHLTPSGGSTSEEGISQWTLSDRVTPGIYSLDDYDFRKPNAW
LFQARQNPVSPTPGQIDVYDWPGRYTEHQQGEFYARVRQEAWQAEHQQIRGTATAMGIAPGSTFTLYNAPHADDNREYLT
LQANYHLKENRYASGDDQSSEHRIDFTVLPADVPWHPPQQATWPKTHGPQTARVVGPAGESIWTDKYGRIKVKFHWDRFG
PKDDGSSCWVRVSSAWAGQGYGGVQIPRVNDEVVVDFINGDPDRPIVTGRVYNEASMPPWALPAAATQMGFMSRSKDGTA
DNANALRFEDKAGAEQVWIQAERNMDTQVKNDESHSIANDHTHLVGGNQIKRVVLNQASGVKGEASALTGKTRSDAVVNA
FTLGSGESLRLECGESVIELLANGQINITGTSFNITVKEDGEINTGGQLDLNQPGGAARTAAPGGGHQAAIQSAVDQLFP
KE*

  Nucleotide sequence: 1929 bp    

>T6CP015741 NZ_JWLO01000001:c565726-563798 [Serratia marcescens] [TssI]
ATGTTGGATCGCATTATTGCGCACACGCCGCTGGGCCAGGAGCAGCTGCTGTTCCGCTCGCTGGACGGTATCGAGGCGCT
TTCCACCCCTTTCGACTTCTCTATTGAATTGCTGAGCACCGACGCGCGGCTCGATCGCAAAGCGCTGCTCGGCCAACCGC
TGACGCTGGAGATCCCGACTCAGGGCTTTCTCAGCGCCCCGCGCTACCTGAATGGCAAGATCACCGCCATCGCCGTCAGC
AGCGAAGAGATCGGCGGTACGCGCTACGCGGTGTATAACCTACACGTACAGCCGGATCTGTGGCCGATGACCAAGGATCG
CAACTTCCGCATCTTCCAGGAACAAACGGTGCCGCAGATCGTCAAGACTCTGCTGGCGGAGCACAACGTGCAGTTGGAAG
ATCAGCTGACCGGCGACTATCGCCTGTGGGGCTACTGCGTGCAGTACAACGAAAGCAGCTTCAACTTCATCAGCCGCCTG
ATGGAGTTGGAGGGCATCTATTACTATTTCAAACACGAGATGGGCAAACACACGCTGGTGCTCGGGGATGCGCCCCACCA
CCACCAGCCCTATCCCGGCTACGAGATGATCCCCTACCACCTGACGCCGTCCGGCGGCAGCACCAGCGAGGAAGGGATCA
GCCAGTGGACGTTGTCCGATCGCGTCACGCCGGGCATCTACAGCCTGGACGACTACGATTTCCGCAAGCCGAACGCCTGG
CTGTTCCAGGCGCGGCAAAACCCGGTCTCGCCGACGCCGGGGCAGATCGACGTCTACGACTGGCCGGGCCGCTACACCGA
GCATCAGCAGGGGGAGTTCTACGCCCGCGTGCGCCAGGAAGCCTGGCAGGCCGAGCATCAGCAGATCCGGGGCACCGCCA
CCGCGATGGGCATCGCTCCCGGCAGCACCTTTACGCTGTATAACGCCCCGCACGCCGACGACAACCGCGAGTACCTGACG
CTGCAGGCCAACTACCATCTGAAAGAGAACCGCTACGCCAGCGGCGACGATCAGAGCAGCGAACACCGTATCGACTTCAC
CGTGCTGCCGGCGGACGTGCCCTGGCACCCGCCGCAGCAGGCCACCTGGCCGAAAACCCACGGGCCGCAGACCGCCCGGG
TGGTCGGCCCGGCCGGCGAATCAATCTGGACCGACAAATACGGCCGCATCAAGGTGAAATTCCACTGGGACCGCTTCGGT
CCGAAGGACGACGGCAGCTCCTGCTGGGTGCGCGTCTCCAGCGCCTGGGCCGGCCAGGGCTACGGCGGCGTGCAGATCCC
GCGCGTCAACGACGAAGTGGTGGTGGACTTTATCAACGGCGATCCGGATCGGCCGATCGTCACCGGGCGCGTTTATAACG
AAGCCAGCATGCCGCCGTGGGCGCTGCCGGCCGCCGCCACCCAAATGGGCTTTATGAGCCGTTCCAAGGACGGCACCGCC
GACAACGCCAACGCCCTGCGTTTCGAAGACAAGGCCGGCGCCGAACAGGTGTGGATCCAGGCGGAACGCAACATGGACAC
CCAGGTCAAAAACGATGAGAGCCACAGCATCGCTAACGACCACACCCACCTGGTGGGCGGCAACCAGATCAAACGGGTGG
TGCTCAATCAGGCCAGCGGCGTCAAAGGCGAGGCCTCGGCGCTGACCGGCAAAACGCGCAGCGACGCCGTGGTCAACGCC
TTTACCCTCGGCTCCGGCGAATCGCTGCGGCTGGAGTGCGGTGAAAGCGTGATCGAGCTGCTGGCGAACGGCCAAATCAA
CATCACCGGCACCAGCTTCAATATCACGGTGAAAGAGGACGGGGAGATCAATACCGGCGGCCAGCTGGATCTCAACCAGC
CCGGCGGCGCCGCGCGCACCGCCGCGCCGGGCGGCGGCCATCAGGCGGCGATCCAGAGCGCCGTCGATCAGCTGTTCCCT
AAAGAGTAG