Detailed information of component protein


Summary

Component ID T6CP015723
Component protein type TssI
T6SS ID (Type) T6SS01258 experimental (Type Unknown)
Strain Aeromonas hydrophila ML09-119
Replicon chromosome
Sequence Protein sequence (927 a.a.); Nucleotide sequence (2781 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AHML_RS06000
Coordinate (Strand) 1312385..1315165 (+)
NCBI ID 511289563
RefSeq NC_021290
Uniprot ID UPI000332B68F
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 4.8e-87 30..325
Phage_base_V PF04717.14 2.4e-14 389..456
ADPrib_exo_Tox PF03496.16 7.7e-12 716..891
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-926 MADSTGLQFTVKVGALPESTFVVAEFALDEALNRPFNLRLELASAQPDVDFGAVLDQPCELLVWYNGELQRRVCGVVSDFAQGDSGFRRTRYQLLVQPALWRLSLRQNSRIFQAQKPDEILSILLQEHGITDYAFALKNEHAKREYCVQYRETDLDFVNRLAAEEGMFYFHEFEAGKHRIVFADDAAALTAGPELFFNLGNRSLEQGPYVRQFHYREAVRPSDVELKDYSFKTPAYGLSHKKQGSELDHQRDTYQHFDYPGRYKLDPSGKAFAQHRLDALRNDAVAGSGKSNSAALLPGQTFSLTEHPNGSLNTDWQIVRILHTGLQPQALEEEGGSGPTVYHNEFGVVKASTTWRARIGSPEAPHKPMVDGPQIAMVVGPEGEEIYCDEHGRVKLQFPWDRYGSSNDQSSCWVRVSQGWAGGQYGMMAIPRIGHEVIVSFLEGDPDQPIVTGRTYHATNRPPYELPANKTRTVLRTETHQGEGFNELRFEDQAGQEEIYIHGQKDLNVLIENDAAWHIKHDEHRDIDNERVTRIKANDHLTVEGEKRDQIKADYSLTVDASLHQKLGQSLLVEAGSELHHKAGMKIVMEAGAELTLKVGGSFVKIDAGGVTLSGGSIKMNSGGSPGSGSGWGGKAPIQPGNVEVPTPPPATLPAPAIHKSMESMAPLAKPCPAAPPPVPPSPAGGPPAPPPAPPQLAGGPMMPPPPPVAATGEGKKPAKKWATVEISKADEALRYYSAQGYTLLNNYLRDRPYKQQEAIDTLLSRSYLNDEPTSRSEFDLAMKAYVADVEAGLAKLPASPDLDFVYRGLALDKPELAALKDQFTGVGNIIVEPGFMSTSPDKAWVNDTLLRIRLSAGHDGRLLGEAAHFKGEAEMLFPTQTRLRVDRVVSSMIGDFDSLLNTIPTSDNASDNRSRIKRLIEVSVL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9885 - -


  Protein sequence: 927 a.a.    

>T6CP015723 NC_021290:1312385-1315165 [Aeromonas hydrophila ML09-119] [TssI]
MADSTGLQFTVKVGALPESTFVVAEFALDEALNRPFNLRLELASAQPDVDFGAVLDQPCELLVWYNGELQRRVCGVVSDF
AQGDSGFRRTRYQLLVQPALWRLSLRQNSRIFQAQKPDEILSILLQEHGITDYAFALKNEHAKREYCVQYRETDLDFVNR
LAAEEGMFYFHEFEAGKHRIVFADDAAALTAGPELFFNLGNRSLEQGPYVRQFHYREAVRPSDVELKDYSFKTPAYGLSH
KKQGSELDHQRDTYQHFDYPGRYKLDPSGKAFAQHRLDALRNDAVAGSGKSNSAALLPGQTFSLTEHPNGSLNTDWQIVR
ILHTGLQPQALEEEGGSGPTVYHNEFGVVKASTTWRARIGSPEAPHKPMVDGPQIAMVVGPEGEEIYCDEHGRVKLQFPW
DRYGSSNDQSSCWVRVSQGWAGGQYGMMAIPRIGHEVIVSFLEGDPDQPIVTGRTYHATNRPPYELPANKTRTVLRTETH
QGEGFNELRFEDQAGQEEIYIHGQKDLNVLIENDAAWHIKHDEHRDIDNERVTRIKANDHLTVEGEKRDQIKADYSLTVD
ASLHQKLGQSLLVEAGSELHHKAGMKIVMEAGAELTLKVGGSFVKIDAGGVTLSGGSIKMNSGGSPGSGSGWGGKAPIQP
GNVEVPTPPPATLPAPAIHKSMESMAPLAKPCPAAPPPVPPSPAGGPPAPPPAPPQLAGGPMMPPPPPVAATGEGKKPAK
KWATVEISKADEALRYYSAQGYTLLNNYLRDRPYKQQEAIDTLLSRSYLNDEPTSRSEFDLAMKAYVADVEAGLAKLPAS
PDLDFVYRGLALDKPELAALKDQFTGVGNIIVEPGFMSTSPDKAWVNDTLLRIRLSAGHDGRLLGEAAHFKGEAEMLFPT
QTRLRVDRVVSSMIGDFDSLLNTIPTSDNASDNRSRIKRLIEVSVL*

  Nucleotide sequence: 2781 bp    

>T6CP015723 NC_021290:1312385-1315165 [Aeromonas hydrophila ML09-119] [TssI]
ATGGCAGACAGCACAGGATTACAATTTACCGTCAAGGTGGGGGCCCTGCCCGAGAGCACCTTCGTGGTGGCCGAGTTTGC
GCTGGATGAAGCGCTCAACCGGCCGTTCAACCTGCGCCTGGAGTTGGCAAGTGCCCAGCCCGATGTCGACTTTGGCGCCG
TGCTGGACCAGCCGTGCGAGCTGCTGGTGTGGTACAACGGCGAGCTGCAACGCCGGGTGTGCGGGGTGGTCAGTGACTTT
GCACAGGGTGACAGCGGCTTTCGCCGCACCCGCTATCAGCTGCTGGTGCAGCCGGCGCTGTGGCGTCTGTCGCTTCGCCA
GAACTCCCGCATCTTCCAGGCGCAAAAGCCTGACGAAATTCTCTCCATCCTGTTGCAAGAGCACGGCATCACCGACTATG
CGTTTGCCCTGAAAAACGAGCACGCCAAGCGGGAGTACTGCGTTCAGTACCGGGAAACCGACCTCGATTTCGTCAACCGC
CTCGCCGCCGAAGAGGGGATGTTCTACTTCCACGAGTTTGAAGCGGGCAAGCACCGCATCGTGTTTGCCGACGACGCGGC
CGCCCTGACCGCTGGCCCCGAGCTCTTCTTCAACCTCGGCAACCGTTCCCTCGAGCAAGGCCCCTATGTGCGGCAGTTTC
ACTACCGGGAGGCAGTGCGCCCGTCGGATGTGGAGCTCAAAGACTACAGCTTCAAGACCCCGGCTTATGGTCTCTCCCAC
AAAAAGCAGGGCAGTGAGCTCGATCATCAACGGGATACCTACCAGCACTTCGACTATCCGGGCCGCTACAAGCTGGACCC
GAGCGGTAAGGCGTTTGCCCAACATCGGCTGGATGCGCTGCGCAACGATGCGGTGGCGGGCAGTGGCAAGTCGAACAGCG
CGGCCTTGCTGCCGGGCCAGACGTTTTCACTCACCGAACACCCCAACGGCAGCCTCAACACCGACTGGCAAATCGTGCGC
ATTCTGCACACCGGCTTGCAGCCACAGGCGCTGGAAGAGGAAGGCGGCAGTGGCCCGACCGTCTACCACAACGAATTCGG
GGTGGTGAAAGCCAGCACCACCTGGCGGGCGCGCATCGGCAGCCCGGAAGCCCCTCACAAGCCCATGGTGGATGGCCCGC
AAATCGCCATGGTGGTGGGTCCCGAAGGGGAGGAGATTTACTGCGACGAGCACGGCCGGGTCAAACTGCAGTTCCCGTGG
GATAGATATGGCAGCTCCAATGACCAGAGCTCCTGCTGGGTGCGGGTCTCCCAGGGCTGGGCCGGCGGTCAGTACGGCAT
GATGGCGATTCCGCGCATCGGCCACGAGGTCATTGTCTCGTTCCTAGAGGGGGACCCCGACCAACCCATCGTGACCGGCC
GCACCTATCATGCCACCAACCGGCCACCCTACGAGTTGCCGGCCAACAAGACCCGCACCGTGCTGCGCACCGAAACCCAT
CAGGGTGAGGGTTTCAACGAGCTGCGCTTTGAGGACCAGGCTGGGCAGGAAGAGATTTATATCCACGGTCAGAAAGACCT
GAATGTGCTTATCGAGAACGATGCTGCTTGGCACATCAAGCACGACGAACACAGAGACATCGACAATGAGCGGGTGACCC
GCATCAAGGCCAATGACCACCTGACGGTAGAGGGTGAGAAGCGCGACCAGATAAAGGCCGACTACTCGCTGACGGTGGAT
GCCAGCCTGCACCAGAAGCTGGGGCAGTCCCTGTTGGTGGAGGCGGGGAGTGAGTTGCACCACAAGGCGGGCATGAAGAT
AGTGATGGAAGCGGGCGCCGAGCTGACCCTGAAAGTGGGTGGCAGCTTTGTGAAGATTGATGCTGGTGGCGTGACCCTCA
GTGGTGGCTCCATCAAGATGAACTCGGGTGGCAGCCCGGGGTCGGGTTCAGGCTGGGGTGGTAAGGCCCCCATCCAGCCA
GGCAATGTCGAGGTGCCAACACCACCACCAGCAACATTGCCAGCCCCGGCCATTCACAAGAGCATGGAGTCCATGGCACC
GCTGGCCAAGCCTTGTCCAGCTGCTCCACCACCTGTACCACCTTCGCCTGCCGGGGGCCCACCAGCTCCACCGCCCGCCC
CACCCCAGCTTGCCGGAGGCCCAATGATGCCACCGCCGCCACCTGTTGCGGCCACAGGGGAAGGCAAAAAGCCGGCAAAG
AAGTGGGCGACGGTAGAGATATCCAAAGCGGATGAAGCACTTAGATACTATTCGGCGCAAGGGTACACATTGCTCAATAA
CTATTTGCGTGATCGCCCCTACAAGCAGCAAGAGGCCATCGATACCCTGCTTAGTCGCAGCTATTTGAATGATGAGCCGA
CATCCAGGAGTGAGTTTGACCTGGCAATGAAGGCCTATGTTGCCGATGTGGAGGCTGGTCTGGCGAAATTGCCGGCTTCA
CCCGATTTGGACTTCGTGTACCGGGGGTTGGCGCTGGACAAGCCGGAGCTTGCAGCCCTGAAAGATCAGTTCACCGGGGT
GGGCAATATCATTGTTGAGCCAGGATTCATGAGTACCTCACCGGACAAGGCCTGGGTCAACGACACCTTGTTGAGGATCC
GCCTATCCGCCGGTCATGATGGTCGTCTGCTGGGGGAGGCTGCGCACTTCAAGGGGGAAGCAGAAATGCTGTTTCCGACC
CAGACCAGACTCAGGGTCGATCGAGTGGTTTCCTCCATGATCGGAGATTTTGACTCCTTGCTCAATACGATTCCAACTTC
TGACAATGCATCGGATAACCGCAGCAGGATCAAGCGACTGATTGAGGTTTCCGTATTATGA