Detailed information of component protein


Summary

Component ID T6CP015716
Component protein type TssB
T6SS ID (Type) T6SS01254 experimental (Type i1)
Strain Vibrio parahaemolyticus strain 12-009A/1335
Replicon chromosome
Sequence Protein sequence (169 a.a.); Nucleotide sequence (507 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) B5C29_RS17105
Coordinate (Strand) 24354..24860 (+)
NCBI ID WP_005480589.1
RefSeq NZ_MYFF01000478
Uniprot ID Q87PU9_VIBPA, A0A0L8TZI4_VIBPH
KEGG ID vpa:VP1402
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VipA PF05591.14 8.3e-59 6..157

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-168 MSRDGSVAPKERINIRYVPATGDTQEDVELPLSMMVVGDFTARADETPIEERTPINIDKDNFNDVLEGMSPNVKVNVENRLSDEEGAQIGVDLTFQNMKDFSPEAIAKSVPELNSLLELREALVALKGPLGNVPAFRKKIASVLQDEEARKKLLDELSIGNDQDAKEE



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9840 - -



  Protein sequence: 169 a.a.    

>T6CP015716 NZ_MYFF01000478:24354-24860 [Vibrio parahaemolyticus] [TssB]
MSRDGSVAPKERINIRYVPATGDTQEDVELPLSMMVVGDFTARADETPIEERTPINIDKDNFNDVLEGMSPNVKVNVENR
LSDEEGAQIGVDLTFQNMKDFSPEAIAKSVPELNSLLELREALVALKGPLGNVPAFRKKIASVLQDEEARKKLLDELSIG
NDQDAKEE*

  Nucleotide sequence: 507 bp    

>T6CP015716 NZ_MYFF01000478:24354-24860 [Vibrio parahaemolyticus] [TssB]
ATGTCACGTGACGGCTCGGTGGCTCCTAAAGAGCGAATTAATATCCGTTATGTTCCAGCAACTGGTGATACGCAAGAAGA
CGTTGAGCTGCCGCTGAGCATGATGGTGGTTGGTGACTTTACTGCACGTGCAGATGAGACGCCAATCGAAGAACGTACCC
CAATCAACATCGATAAAGACAACTTTAATGACGTGTTAGAAGGCATGTCTCCAAACGTTAAAGTAAATGTTGAAAACCGC
TTATCTGATGAAGAAGGCGCACAGATCGGTGTTGACCTAACGTTCCAAAATATGAAGGACTTCTCTCCGGAAGCGATCGC
GAAAAGTGTACCTGAACTTAACAGTCTTCTTGAGCTTCGCGAAGCATTGGTTGCACTAAAAGGTCCTCTAGGTAACGTAC
CTGCGTTCCGTAAGAAGATTGCATCGGTTCTTCAAGACGAAGAAGCAAGAAAGAAACTGTTGGATGAACTAAGCATTGGC
AACGACCAAGACGCGAAAGAAGAGTAA