Detailed information of component protein
Summary
| Component ID | T6CP015716 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS01254  (Type i1) |
| Strain | Vibrio parahaemolyticus strain 12-009A/1335 |
| Replicon | chromosome |
| Sequence | Protein sequence (169 a.a.); Nucleotide sequence (507 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | B5C29_RS17105 |
| Coordinate (Strand) | 24354..24860 (+) |
| NCBI ID | WP_005480589.1 |
| RefSeq | NZ_MYFF01000478 |
| Uniprot ID | Q87PU9_VIBPA, A0A0L8TZI4_VIBPH |
| KEGG ID | vpa:VP1402 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 8.3e-59 | 6..157 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-168 | MSRDGSVAPKERINIRYVPATGDTQEDVELPLSMMVVGDFTARADETPIEERTPINIDKDNFNDVLEGMSPNVKVNVENRLSDEEGAQIGVDLTFQNMKDFSPEAIAKSVPELNSLLELREALVALKGPLGNVPAFRKKIASVLQDEEARKKLLDELSIGNDQDAKEE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9840 | - | - |
Protein sequence: 169 a.a.
>T6CP015716 NZ_MYFF01000478:24354-24860 [Vibrio parahaemolyticus] [TssB]
MSRDGSVAPKERINIRYVPATGDTQEDVELPLSMMVVGDFTARADETPIEERTPINIDKDNFNDVLEGMSPNVKVNVENR
LSDEEGAQIGVDLTFQNMKDFSPEAIAKSVPELNSLLELREALVALKGPLGNVPAFRKKIASVLQDEEARKKLLDELSIG
NDQDAKEE*
MSRDGSVAPKERINIRYVPATGDTQEDVELPLSMMVVGDFTARADETPIEERTPINIDKDNFNDVLEGMSPNVKVNVENR
LSDEEGAQIGVDLTFQNMKDFSPEAIAKSVPELNSLLELREALVALKGPLGNVPAFRKKIASVLQDEEARKKLLDELSIG
NDQDAKEE*
Nucleotide sequence: 507 bp
>T6CP015716 NZ_MYFF01000478:24354-24860 [Vibrio parahaemolyticus] [TssB]
ATGTCACGTGACGGCTCGGTGGCTCCTAAAGAGCGAATTAATATCCGTTATGTTCCAGCAACTGGTGATACGCAAGAAGA
CGTTGAGCTGCCGCTGAGCATGATGGTGGTTGGTGACTTTACTGCACGTGCAGATGAGACGCCAATCGAAGAACGTACCC
CAATCAACATCGATAAAGACAACTTTAATGACGTGTTAGAAGGCATGTCTCCAAACGTTAAAGTAAATGTTGAAAACCGC
TTATCTGATGAAGAAGGCGCACAGATCGGTGTTGACCTAACGTTCCAAAATATGAAGGACTTCTCTCCGGAAGCGATCGC
GAAAAGTGTACCTGAACTTAACAGTCTTCTTGAGCTTCGCGAAGCATTGGTTGCACTAAAAGGTCCTCTAGGTAACGTAC
CTGCGTTCCGTAAGAAGATTGCATCGGTTCTTCAAGACGAAGAAGCAAGAAAGAAACTGTTGGATGAACTAAGCATTGGC
AACGACCAAGACGCGAAAGAAGAGTAA
ATGTCACGTGACGGCTCGGTGGCTCCTAAAGAGCGAATTAATATCCGTTATGTTCCAGCAACTGGTGATACGCAAGAAGA
CGTTGAGCTGCCGCTGAGCATGATGGTGGTTGGTGACTTTACTGCACGTGCAGATGAGACGCCAATCGAAGAACGTACCC
CAATCAACATCGATAAAGACAACTTTAATGACGTGTTAGAAGGCATGTCTCCAAACGTTAAAGTAAATGTTGAAAACCGC
TTATCTGATGAAGAAGGCGCACAGATCGGTGTTGACCTAACGTTCCAAAATATGAAGGACTTCTCTCCGGAAGCGATCGC
GAAAAGTGTACCTGAACTTAACAGTCTTCTTGAGCTTCGCGAAGCATTGGTTGCACTAAAAGGTCCTCTAGGTAACGTAC
CTGCGTTCCGTAAGAAGATTGCATCGGTTCTTCAAGACGAAGAAGCAAGAAAGAAACTGTTGGATGAACTAAGCATTGGC
AACGACCAAGACGCGAAAGAAGAGTAA