Detailed information of component protein


Summary

Component ID T6CP015712
Component protein type TssH
T6SS ID (Type) T6SS01254 experimental (Type i1)
Strain Vibrio parahaemolyticus strain 12-009A/1335
Replicon chromosome
Sequence Protein sequence (893 a.a.); Nucleotide sequence (2679 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) B5C29_RS17060
Coordinate (Strand) 10921..13599 (-)
NCBI ID 1189147610
RefSeq NZ_MYFF01000478
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 7.8e-44 626..790
AAA_lid_9 PF17871.3 6.2e-31 357..452
ClpB_D2-small PF10431.11 1.3e-13 797..871
AAA PF00004.31 7.4e-10 220..348
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-892 MININLSSLIQRLHPIAKVALEDAAALAVSEKANEVQIEHYLLSLLERPNSDFDVLLSHFDCSENLLRQSVRSTLDTNAKGNGSKPVFSALLIEWLQESWLVSSLDLSETQIRSGALLLTLVSNPLRYGQHGYASILEAVNPDSLKRNFAELTSHSIEAQVATSEKTQAREDGSALSKFTTDFTGKARKGEIDPVFCRDQEIRQIVDILARRRKNNPIAVGEPGVGKTAVVEGLALKIVQGDVPDNLKGVELYGLDMGLLQAGASVKGEFEKRLNAVLDEVKNSPTPIILFIDEAHTLVGGGNQAGGSDAANLLKPALARGEVKTIAATTWSEYKKYFEKDPALARRFQLVKLDEPSPEQAALIIRGLRPAYEKSHNVYVRDDAITAAAALSARYISGRQLPDKAIDVLDTACARVNISLNAIPASVETLQQELAAQQRELEALERDALQQTGDKHSLANIPDLKLAMETTKEELAEQEAQWHKEKEQIQEMIALRSRLHELVFGETNEEELVAEEDSEQEQDVSPYAEMDEQAVRIAISACQEQLDAIRNGNPLVHFEVGPDEVSHVISDWTGIPMGKMLQDEAETTLKLKESLTQSIKGQEYAIDALSEGIQTAKAGLGNPDAPTGVFLLVGPSGVGKTETARAIADQMFGGERFMTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGMLTEAVRQRPYSVVLLDEVEKADPEVLNLFYQVFDKGTLNDGEGRTIDFKNTLIIMTSNLATHEIESLVHQSKDIDANIIAEAIRPTLNQHFKPALLARMSVLPFVPLSDEAMTEIIHHKLNKVSQRLHNHHKLSLNYEESLVEFVLGNCRLAETGARNIDAVINRQLLPQLSTQLLVHDKDDSHTQITVSVDEQGTLAYAFS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9911 - -


  Protein sequence: 893 a.a.    

>T6CP015712 NZ_MYFF01000478:c13599-10921 [Vibrio parahaemolyticus] [TssH]
MININLSSLIQRLHPIAKVALEDAAALAVSEKANEVQIEHYLLSLLERPNSDFDVLLSHFDCSENLLRQSVRSTLDTNAK
GNGSKPVFSALLIEWLQESWLVSSLDLSETQIRSGALLLTLVSNPLRYGQHGYASILEAVNPDSLKRNFAELTSHSIEAQ
VATSEKTQAREDGSALSKFTTDFTGKARKGEIDPVFCRDQEIRQIVDILARRRKNNPIAVGEPGVGKTAVVEGLALKIVQ
GDVPDNLKGVELYGLDMGLLQAGASVKGEFEKRLNAVLDEVKNSPTPIILFIDEAHTLVGGGNQAGGSDAANLLKPALAR
GEVKTIAATTWSEYKKYFEKDPALARRFQLVKLDEPSPEQAALIIRGLRPAYEKSHNVYVRDDAITAAAALSARYISGRQ
LPDKAIDVLDTACARVNISLNAIPASVETLQQELAAQQRELEALERDALQQTGDKHSLANIPDLKLAMETTKEELAEQEA
QWHKEKEQIQEMIALRSRLHELVFGETNEEELVAEEDSEQEQDVSPYAEMDEQAVRIAISACQEQLDAIRNGNPLVHFEV
GPDEVSHVISDWTGIPMGKMLQDEAETTLKLKESLTQSIKGQEYAIDALSEGIQTAKAGLGNPDAPTGVFLLVGPSGVGK
TETARAIADQMFGGERFMTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGMLTEAVRQRPYSVVLLDEVEKADPEVLNLFY
QVFDKGTLNDGEGRTIDFKNTLIIMTSNLATHEIESLVHQSKDIDANIIAEAIRPTLNQHFKPALLARMSVLPFVPLSDE
AMTEIIHHKLNKVSQRLHNHHKLSLNYEESLVEFVLGNCRLAETGARNIDAVINRQLLPQLSTQLLVHDKDDSHTQITVS
VDEQGTLAYAFS*

  Nucleotide sequence: 2679 bp    

>T6CP015712 NZ_MYFF01000478:c13599-10921 [Vibrio parahaemolyticus] [TssH]
ATGATAAATATAAACCTTTCTTCATTAATTCAGCGTCTACACCCGATAGCTAAAGTAGCATTAGAAGATGCCGCAGCACT
CGCAGTCTCGGAAAAAGCAAACGAAGTTCAAATTGAGCATTATTTACTGAGTCTATTAGAAAGGCCAAATAGTGATTTTG
ACGTCTTATTAAGTCATTTTGATTGTTCTGAGAACTTATTGAGACAATCGGTTCGATCCACACTCGATACCAACGCCAAA
GGAAATGGCAGCAAACCTGTTTTTTCTGCTTTATTAATCGAATGGTTACAAGAAAGCTGGCTGGTTTCTTCTTTAGATCT
ATCCGAAACACAAATCCGCTCTGGCGCCCTACTCCTTACTCTTGTTAGCAACCCTCTGCGTTATGGCCAACATGGTTACG
CCTCTATTCTTGAAGCAGTAAACCCTGATAGCCTTAAACGTAACTTTGCAGAACTAACCAGCCACTCTATTGAGGCGCAA
GTAGCGACTTCTGAGAAAACACAAGCTCGTGAAGATGGTTCTGCACTGAGCAAGTTCACGACAGACTTCACTGGTAAAGC
ACGCAAAGGCGAAATCGATCCTGTTTTCTGCCGCGACCAAGAAATCCGCCAAATTGTAGACATTCTTGCTCGTCGCCGTA
AAAACAACCCTATTGCTGTTGGTGAACCGGGCGTTGGTAAAACCGCAGTAGTAGAAGGCTTGGCACTTAAGATTGTACAA
GGTGACGTACCAGACAACCTTAAAGGTGTTGAGCTTTACGGCCTGGACATGGGTCTTCTGCAAGCAGGCGCAAGCGTAAA
AGGCGAATTCGAAAAACGCCTAAACGCGGTATTGGATGAAGTGAAAAACTCACCAACTCCAATCATTCTATTCATCGATG
AAGCACACACCCTTGTTGGCGGCGGCAACCAAGCGGGCGGTAGCGATGCTGCTAACTTATTAAAACCTGCCCTAGCACGT
GGTGAAGTAAAGACAATCGCAGCAACAACATGGTCGGAATACAAAAAGTACTTTGAGAAAGATCCTGCTCTTGCGCGTCG
TTTCCAATTGGTGAAACTCGACGAACCATCTCCTGAGCAAGCAGCATTGATCATTCGTGGTCTGCGCCCTGCATACGAGA
AGTCTCACAACGTTTACGTGCGTGATGACGCCATCACTGCTGCGGCAGCACTTTCTGCGCGTTACATCTCTGGTCGTCAA
CTACCAGACAAAGCGATCGATGTACTAGATACGGCGTGTGCACGAGTGAACATCAGCCTTAATGCCATTCCTGCTTCTGT
AGAGACTCTGCAGCAAGAACTTGCAGCTCAACAGCGCGAGCTTGAAGCACTTGAGCGTGATGCTCTGCAGCAAACTGGCG
ACAAGCACAGCCTTGCTAATATTCCAGACCTAAAACTGGCAATGGAAACAACGAAAGAAGAGCTGGCAGAGCAAGAAGCC
CAATGGCACAAAGAAAAAGAGCAGATCCAAGAGATGATAGCTCTACGCTCCCGCTTACATGAGCTGGTCTTTGGCGAAAC
AAATGAAGAAGAGCTTGTTGCAGAAGAAGATTCAGAACAAGAGCAAGACGTTTCTCCATATGCAGAAATGGATGAACAAG
CAGTTCGCATTGCAATTTCAGCCTGCCAAGAACAGCTAGACGCAATCCGCAATGGCAACCCACTGGTTCACTTTGAAGTG
GGTCCAGATGAAGTCAGCCACGTCATCTCAGACTGGACCGGTATTCCAATGGGTAAGATGCTTCAAGACGAAGCAGAGAC
CACGCTAAAACTGAAAGAGAGCCTAACACAAAGCATCAAAGGCCAAGAATACGCTATCGATGCACTGTCTGAAGGCATTC
AAACCGCAAAAGCTGGCTTGGGTAATCCAGACGCACCAACAGGCGTATTCCTGCTAGTTGGTCCAAGTGGTGTGGGTAAA
ACCGAGACAGCTCGTGCAATTGCTGACCAAATGTTTGGTGGCGAGCGCTTTATGACGACCATCAACATGTCTGAGTTCCA
AGAGAAGCACACGGTATCTCGCCTAATCGGTTCGCCTCCGGGTTACGTAGGGTACGGTGAAGGCGGCATGCTGACAGAGG
CGGTACGTCAGCGTCCATATTCTGTTGTACTTCTCGATGAAGTAGAAAAAGCCGATCCAGAAGTGTTGAACCTGTTCTAC
CAAGTGTTCGACAAAGGTACGCTGAACGACGGTGAAGGTCGTACTATTGACTTCAAGAACACGCTGATCATCATGACCAG
CAACCTTGCGACGCACGAAATTGAATCTCTGGTTCACCAGTCTAAAGACATTGATGCTAACATTATCGCAGAAGCCATCC
GCCCTACTTTGAACCAACACTTCAAGCCGGCGCTGTTGGCACGTATGTCCGTACTTCCGTTTGTGCCTCTGTCTGACGAA
GCAATGACAGAAATTATCCACCACAAACTAAACAAAGTTTCTCAGCGCCTACATAACCATCACAAGTTGTCTCTGAACTA
CGAAGAAAGCTTGGTCGAGTTCGTACTAGGTAACTGTCGCCTTGCTGAAACAGGCGCACGTAACATTGACGCGGTCATCA
ACCGTCAGTTACTGCCTCAGCTATCGACACAGCTATTGGTGCATGATAAGGATGATTCACACACGCAAATCACAGTTTCT
GTCGATGAGCAAGGAACACTGGCCTATGCGTTCAGTTAA