Detailed information of component protein


Summary

Component ID T6CP015711
Component protein type TagH
T6SS ID (Type) T6SS01253 experimental (Type i5)
Strain Vibrio parahaemolyticus strain 12-009A/1335
Replicon chromosome
Sequence Protein sequence (399 a.a.); Nucleotide sequence (1197 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) B5C29_RS20150
Coordinate (Strand) 29453..30649 (-)
NCBI ID 491606233
RefSeq NZ_MYFF01000494
Uniprot ID Q87HC2_VIBPA, A0A0L8RYZ1_VIBPH
KEGG ID vpa:VPA1043
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
FHA PF00498.28 1.2e-14 32..101

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-398 MKLVLTITSFHKFTPEIESEFVFESSDEHAKVTFGRSEQCDWTLPDPERVISGTHGELIKFGDKYLIKDLSTNGTFVNNAVTPIGQGNELALSHGDTVALGDYQIQISISDISEDRTEHQFTSNPEVKTPVGFEQHVESIPEMEDFGLSAAELMDESVPSDFQLDIGLVDDFLEIPSHETEVPQPKVASMQPDTNAKSQKPTVHRGELEAFIYGMGIDPNMVPSQNREQWFEQLGQSFSLMLIGLMETLHNRAVFKQTNRVNHTAFRKSENNPLKFSANLEDAIHNLYNRQTSSFLKPNAAIKEAFNDIENHEQALMQGVAGTVSSVMSLVEPNTIYSDALAKDNVINKVIPARKYAQSWKRFEGIHSQLTDELVNKESPFYLEDFAKHYELALKNKG



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9679 - -



  Protein sequence: 399 a.a.    

>T6CP015711 NZ_MYFF01000494:c30649-29453 [Vibrio parahaemolyticus] [TagH]
MKLVLTITSFHKFTPEIESEFVFESSDEHAKVTFGRSEQCDWTLPDPERVISGTHGELIKFGDKYLIKDLSTNGTFVNNA
VTPIGQGNELALSHGDTVALGDYQIQISISDISEDRTEHQFTSNPEVKTPVGFEQHVESIPEMEDFGLSAAELMDESVPS
DFQLDIGLVDDFLEIPSHETEVPQPKVASMQPDTNAKSQKPTVHRGELEAFIYGMGIDPNMVPSQNREQWFEQLGQSFSL
MLIGLMETLHNRAVFKQTNRVNHTAFRKSENNPLKFSANLEDAIHNLYNRQTSSFLKPNAAIKEAFNDIENHEQALMQGV
AGTVSSVMSLVEPNTIYSDALAKDNVINKVIPARKYAQSWKRFEGIHSQLTDELVNKESPFYLEDFAKHYELALKNKG*

  Nucleotide sequence: 1197 bp    

>T6CP015711 NZ_MYFF01000494:c30649-29453 [Vibrio parahaemolyticus] [TagH]
ATGAAATTGGTATTGACCATAACGAGTTTCCACAAATTTACTCCGGAAATAGAGAGTGAGTTTGTGTTTGAATCAAGTGA
TGAGCATGCAAAGGTAACCTTCGGACGCTCAGAACAATGTGACTGGACGTTACCAGACCCTGAGAGAGTTATTTCTGGGA
CTCACGGCGAATTGATTAAATTTGGCGATAAATATCTAATTAAAGATTTATCAACAAATGGCACATTTGTTAATAATGCA
GTTACTCCAATCGGCCAAGGGAATGAGCTTGCTTTGTCCCATGGTGACACTGTTGCTTTAGGCGATTATCAAATACAAAT
TAGTATTAGTGATATCTCTGAAGATAGGACAGAGCATCAATTTACATCTAACCCAGAGGTTAAGACGCCAGTTGGATTCG
AACAGCACGTAGAATCGATTCCAGAGATGGAAGATTTTGGTTTAAGCGCTGCCGAGTTGATGGATGAAAGTGTCCCATCA
GATTTTCAGTTAGACATTGGTCTAGTAGATGATTTTCTAGAAATTCCGAGTCACGAAACTGAAGTGCCACAACCTAAAGT
TGCATCAATGCAGCCTGATACCAACGCTAAAAGCCAAAAACCTACAGTGCATCGAGGTGAACTGGAAGCCTTCATTTATG
GCATGGGGATCGACCCCAATATGGTACCAAGCCAAAATCGAGAGCAGTGGTTTGAACAATTAGGTCAGTCGTTTTCTCTC
ATGCTTATTGGGCTAATGGAGACTCTTCACAATCGGGCTGTATTTAAACAAACCAATCGCGTCAACCATACTGCATTTAG
AAAGTCTGAAAATAATCCACTTAAGTTTTCAGCAAATTTGGAAGATGCAATCCACAATTTGTATAACCGTCAAACGTCAA
GTTTTTTAAAGCCTAATGCCGCAATAAAAGAAGCATTTAACGATATTGAAAATCATGAGCAGGCTTTAATGCAAGGAGTA
GCGGGTACGGTATCGAGTGTCATGTCTCTCGTTGAACCTAATACTATTTATTCAGATGCATTGGCTAAAGACAATGTAAT
TAACAAGGTTATTCCAGCAAGAAAATATGCTCAGAGTTGGAAGCGCTTTGAAGGTATTCATAGCCAATTAACAGATGAAC
TTGTCAATAAAGAGTCTCCATTTTATTTAGAAGATTTTGCTAAGCACTACGAATTAGCGCTCAAGAATAAAGGTTAA