Detailed information of component protein


Summary

Component ID T6CP015709
Component protein type TssK
T6SS ID (Type) T6SS01253 experimental (Type i5)
Strain Vibrio parahaemolyticus strain 12-009A/1335
Replicon chromosome
Sequence Protein sequence (442 a.a.); Nucleotide sequence (1326 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) B5C29_RS20140
Coordinate (Strand) 27641..28966 (-)
NCBI ID 516016888
RefSeq NZ_MYFF01000494
Uniprot ID S5JDS6_VIBPH, A0A2S1MEX8_VIBPH
KEGG ID vpf:M634_23125
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.2e-122 19..439
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-441 MMQYSKTAWCEGMFLRPQHFQQHERAISNEYKGLHSLGGSYNWGVWNCRVKEHALKTGLIELDNLQAILPDMTLIDFSATTSFLSPLKVKKGTENTLVKVIVPLSKVSSKMIADPSETTVSRYLLQDLDVIDNLTGQDEETIQVASLNIELKSSNEQLTGYIELPILKIKEVSTEGEVILDDSYVPPLLNLLNDKVMTGYLRNAMAMTKIRADVIAQRLVKGKAASASAVDFIMLQMLNRYEAILKHFSELEKVHPLELATTFKGYIGELATFSHTTKRLPNLKAYDHLEVASVFAELNQVLSQYLSVVLDQTASKLPLEVRQYGIQVTPLPDKRLLESCQFVLAIKADTTTDEIRRLVPAQLKLGPAEQIRDLINNQINGINVAPLSVVPRQIPYQTGYVYFEVVKKGPFWMRLKDSGGIALHLSGHFPNPDIELWSINQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9884 - -


  Protein sequence: 442 a.a.    

>T6CP015709 NZ_MYFF01000494:c28966-27641 [Vibrio parahaemolyticus] [TssK]
MMQYSKTAWCEGMFLRPQHFQQHERAISNEYKGLHSLGGSYNWGVWNCRVKEHALKTGLIELDNLQAILPDMTLIDFSAT
TSFLSPLKVKKGTENTLVKVIVPLSKVSSKMIADPSETTVSRYLLQDLDVIDNLTGQDEETIQVASLNIELKSSNEQLTG
YIELPILKIKEVSTEGEVILDDSYVPPLLNLLNDKVMTGYLRNAMAMTKIRADVIAQRLVKGKAASASAVDFIMLQMLNR
YEAILKHFSELEKVHPLELATTFKGYIGELATFSHTTKRLPNLKAYDHLEVASVFAELNQVLSQYLSVVLDQTASKLPLE
VRQYGIQVTPLPDKRLLESCQFVLAIKADTTTDEIRRLVPAQLKLGPAEQIRDLINNQINGINVAPLSVVPRQIPYQTGY
VYFEVVKKGPFWMRLKDSGGIALHLSGHFPNPDIELWSINQ*

  Nucleotide sequence: 1326 bp    

>T6CP015709 NZ_MYFF01000494:c28966-27641 [Vibrio parahaemolyticus] [TssK]
ATGATGCAATACTCCAAGACGGCTTGGTGCGAGGGGATGTTTCTGCGTCCCCAGCATTTTCAACAGCACGAACGCGCAAT
ATCTAATGAATATAAAGGCTTACACAGTTTAGGTGGCTCATATAACTGGGGCGTTTGGAATTGCCGTGTAAAAGAACATG
CCTTAAAAACAGGCTTGATTGAACTTGATAATCTTCAAGCAATTCTTCCTGATATGACGCTGATAGACTTTTCAGCAACG
ACAAGTTTTCTGTCTCCTTTAAAGGTAAAAAAAGGGACGGAAAATACCTTAGTGAAGGTGATCGTTCCACTCTCAAAAGT
CAGCAGTAAAATGATCGCGGATCCAAGTGAAACAACGGTTTCTCGGTATTTACTTCAAGATCTAGACGTTATTGATAACC
TGACGGGCCAAGATGAAGAAACGATTCAAGTGGCCTCATTAAATATCGAGCTGAAATCAAGCAATGAGCAGTTAACAGGT
TATATAGAGCTACCAATCCTTAAGATTAAAGAAGTTTCTACGGAAGGAGAGGTCATTCTTGATGATTCTTACGTACCACC
ACTTCTAAACTTGTTAAATGACAAGGTGATGACAGGGTATCTACGTAATGCAATGGCAATGACCAAGATACGCGCAGATG
TTATCGCTCAACGACTTGTTAAAGGAAAAGCGGCTTCAGCATCTGCGGTAGATTTCATAATGCTGCAAATGTTGAATCGA
TATGAAGCCATATTGAAGCATTTTAGTGAGCTGGAGAAAGTACACCCCTTAGAGCTTGCGACAACCTTTAAAGGCTACAT
AGGCGAATTGGCAACGTTTTCTCACACCACCAAGCGCTTACCTAATCTCAAAGCTTACGATCACCTTGAAGTTGCAAGTG
TGTTTGCTGAACTTAATCAAGTCCTTAGTCAGTACTTGAGTGTCGTTCTTGATCAGACTGCAAGTAAGTTGCCACTAGAA
GTACGCCAGTACGGTATCCAAGTGACACCACTTCCAGATAAGCGACTATTGGAATCATGTCAGTTTGTATTGGCGATTAA
AGCGGACACAACAACGGATGAGATTAGACGCTTAGTCCCTGCGCAATTGAAGCTTGGTCCGGCAGAACAGATTAGAGATC
TAATCAACAACCAGATTAATGGAATTAACGTAGCTCCTTTAAGTGTCGTGCCGCGACAGATTCCATATCAAACCGGGTAT
GTTTATTTTGAGGTCGTTAAGAAGGGGCCATTCTGGATGCGACTTAAAGACAGCGGTGGTATTGCACTGCATTTATCTGG
TCATTTCCCAAATCCGGACATAGAGCTTTGGAGCATTAATCAATAA