Detailed information of component protein
Summary
| Component ID | T6CP015706 |
| Component protein type | TagF |
| T6SS ID (Type) | T6SS01253  (Type i5) |
| Strain | Vibrio parahaemolyticus strain 12-009A/1335 |
| Replicon | chromosome |
| Sequence | Protein sequence (232 a.a.); Nucleotide sequence (696 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | B5C29_RS20125 |
| Coordinate (Strand) | 22126..22821 (-) |
| NCBI ID | 686278490 |
| RefSeq | NZ_MYFF01000494 |
| Uniprot ID | UPI0004E76A97 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| TagF_N | PF09867.11 | 1.6e-39 | 11..140 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-231 | MPANLVTPEWGYIGKMPAKGDFVKDGISPEFANRWHDWQQAVIAVSKEQLGDTWNDYFLTAPVWHFALDVSYMDDATYIGSMIPSVDACGRYFFFTVVRAVKGKAAQYWAQSGWTEDSQTLALSVLDDEFVFDVWHRSMQEKCELVSEVSICNEEMALLYQSPISTVFSFSTEVKQNTLLNHLIESQQRKPCFWWTEGSTHIESCMFVSTGLPSIGQFSAMLDGRWQMWSW |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9920 | - | - |
Protein sequence: 232 a.a.
>T6CP015706 NZ_MYFF01000494:c22821-22126 [Vibrio parahaemolyticus] [TagF]
MPANLVTPEWGYIGKMPAKGDFVKDGISPEFANRWHDWQQAVIAVSKEQLGDTWNDYFLTAPVWHFALDVSYMDDATYIG
SMIPSVDACGRYFFFTVVRAVKGKAAQYWAQSGWTEDSQTLALSVLDDEFVFDVWHRSMQEKCELVSEVSICNEEMALLY
QSPISTVFSFSTEVKQNTLLNHLIESQQRKPCFWWTEGSTHIESCMFVSTGLPSIGQFSAMLDGRWQMWSW*
MPANLVTPEWGYIGKMPAKGDFVKDGISPEFANRWHDWQQAVIAVSKEQLGDTWNDYFLTAPVWHFALDVSYMDDATYIG
SMIPSVDACGRYFFFTVVRAVKGKAAQYWAQSGWTEDSQTLALSVLDDEFVFDVWHRSMQEKCELVSEVSICNEEMALLY
QSPISTVFSFSTEVKQNTLLNHLIESQQRKPCFWWTEGSTHIESCMFVSTGLPSIGQFSAMLDGRWQMWSW*
Nucleotide sequence: 696 bp
>T6CP015706 NZ_MYFF01000494:c22821-22126 [Vibrio parahaemolyticus] [TagF]
ATGCCCGCAAACCTTGTAACGCCTGAGTGGGGCTACATCGGAAAAATGCCGGCTAAAGGTGACTTTGTTAAGGACGGTAT
TTCTCCTGAATTTGCAAACCGTTGGCACGACTGGCAGCAAGCTGTTATTGCAGTGAGCAAAGAGCAACTGGGTGACACTT
GGAACGATTATTTTTTAACTGCACCAGTTTGGCACTTTGCACTGGATGTGAGTTACATGGACGATGCTACGTATATCGGC
AGCATGATTCCAAGTGTAGATGCATGCGGTCGCTACTTCTTTTTTACTGTTGTTCGAGCGGTAAAAGGCAAAGCAGCACA
GTATTGGGCACAAAGTGGCTGGACTGAAGATAGCCAGACTCTAGCGCTGTCAGTGTTAGACGATGAATTTGTATTTGATG
TATGGCACCGAAGCATGCAGGAAAAGTGTGAGCTTGTTTCTGAAGTATCGATATGCAATGAAGAAATGGCGCTTTTGTAC
CAAAGCCCGATCTCAACAGTGTTTAGCTTTTCAACTGAAGTAAAGCAAAACACGTTGTTAAATCATCTAATTGAGAGTCA
ACAGAGAAAACCATGCTTCTGGTGGACAGAAGGCTCTACTCATATTGAATCATGTATGTTTGTTAGCACTGGGCTGCCAT
CTATTGGCCAATTCTCTGCAATGTTAGATGGTCGTTGGCAAATGTGGAGTTGGTAG
ATGCCCGCAAACCTTGTAACGCCTGAGTGGGGCTACATCGGAAAAATGCCGGCTAAAGGTGACTTTGTTAAGGACGGTAT
TTCTCCTGAATTTGCAAACCGTTGGCACGACTGGCAGCAAGCTGTTATTGCAGTGAGCAAAGAGCAACTGGGTGACACTT
GGAACGATTATTTTTTAACTGCACCAGTTTGGCACTTTGCACTGGATGTGAGTTACATGGACGATGCTACGTATATCGGC
AGCATGATTCCAAGTGTAGATGCATGCGGTCGCTACTTCTTTTTTACTGTTGTTCGAGCGGTAAAAGGCAAAGCAGCACA
GTATTGGGCACAAAGTGGCTGGACTGAAGATAGCCAGACTCTAGCGCTGTCAGTGTTAGACGATGAATTTGTATTTGATG
TATGGCACCGAAGCATGCAGGAAAAGTGTGAGCTTGTTTCTGAAGTATCGATATGCAATGAAGAAATGGCGCTTTTGTAC
CAAAGCCCGATCTCAACAGTGTTTAGCTTTTCAACTGAAGTAAAGCAAAACACGTTGTTAAATCATCTAATTGAGAGTCA
ACAGAGAAAACCATGCTTCTGGTGGACAGAAGGCTCTACTCATATTGAATCATGTATGTTTGTTAGCACTGGGCTGCCAT
CTATTGGCCAATTCTCTGCAATGTTAGATGGTCGTTGGCAAATGTGGAGTTGGTAG