Detailed information of component protein


Summary

Component ID T6CP015705
Component protein type TssA
T6SS ID (Type) T6SS01253 experimental (Type i5)
Strain Vibrio parahaemolyticus strain 12-009A/1335
Replicon chromosome
Sequence Protein sequence (374 a.a.); Nucleotide sequence (1122 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) B5C29_RS20115
Coordinate (Strand) 20209..21330 (-)
NCBI ID 659012108
RefSeq NZ_MYFF01000494
Uniprot ID UPI00041B834D
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 1.1e-31 13..142
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-373 MSNTMFDWYEQVLAPISEDNPTGIDPREDVSPQSAYYRLKDQRMVARNAERNAIIEEESIHTHNNLWRVFVEEVPEVLATQSKDFEFVAWLIEALTRLYGFRGMGVGYKIASAFVESYWDELHPMPDEDGIETRISAITGLNGIDSEGTLIFPLASIPLTDMGVEQSYAYWEYQQAIELERLDEDKRRARVDQGAIELSRITDTVKSTSDEFYQALIADLEFATGAFNEFSQRLDDAVGDVTPSSYISKRIESIHAALKHLLGNRFKDKAEVSISDENGDEELEEASQQAVTHNSSALLVTNMQSREQAIQQLQHVADFFRESEPHSPVSYSIEQIIRWCGMPLPELLAELISDGDAKRSYFRLVGIAEQNEN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9890 - -


  Protein sequence: 374 a.a.    

>T6CP015705 NZ_MYFF01000494:c21330-20209 [Vibrio parahaemolyticus] [TssA]
MSNTMFDWYEQVLAPISEDNPTGIDPREDVSPQSAYYRLKDQRMVARNAERNAIIEEESIHTHNNLWRVFVEEVPEVLAT
QSKDFEFVAWLIEALTRLYGFRGMGVGYKIASAFVESYWDELHPMPDEDGIETRISAITGLNGIDSEGTLIFPLASIPLT
DMGVEQSYAYWEYQQAIELERLDEDKRRARVDQGAIELSRITDTVKSTSDEFYQALIADLEFATGAFNEFSQRLDDAVGD
VTPSSYISKRIESIHAALKHLLGNRFKDKAEVSISDENGDEELEEASQQAVTHNSSALLVTNMQSREQAIQQLQHVADFF
RESEPHSPVSYSIEQIIRWCGMPLPELLAELISDGDAKRSYFRLVGIAEQNEN*

  Nucleotide sequence: 1122 bp    

>T6CP015705 NZ_MYFF01000494:c21330-20209 [Vibrio parahaemolyticus] [TssA]
ATGAGTAACACGATGTTTGATTGGTATGAGCAAGTCCTTGCACCAATTTCGGAAGACAATCCGACTGGCATTGATCCAAG
AGAGGATGTCTCTCCTCAGTCTGCTTATTATCGACTTAAAGATCAGCGAATGGTGGCAAGAAACGCAGAGCGAAACGCCA
TCATCGAAGAAGAAAGTATTCATACACATAACAACTTATGGCGCGTTTTTGTTGAAGAAGTACCAGAAGTTCTCGCTACA
CAATCAAAAGATTTTGAGTTTGTTGCCTGGCTAATAGAAGCATTAACTCGGCTTTATGGTTTTAGAGGCATGGGCGTAGG
CTACAAAATTGCTAGCGCGTTTGTTGAGTCATATTGGGATGAGCTGCACCCAATGCCTGATGAAGACGGCATAGAAACGC
GGATTTCTGCCATCACTGGACTTAATGGTATTGATAGTGAGGGAACGCTGATCTTTCCTCTTGCCTCGATTCCATTGACG
GATATGGGTGTGGAGCAATCTTATGCATATTGGGAGTACCAACAAGCCATTGAACTCGAGCGCTTGGACGAAGACAAGCG
AAGAGCACGAGTAGATCAAGGCGCAATTGAATTGTCGCGTATCACTGACACTGTGAAATCAACTTCTGATGAGTTTTACC
AGGCTCTGATTGCCGATCTCGAGTTCGCTACAGGTGCTTTTAATGAGTTCAGTCAGCGACTTGATGACGCTGTAGGGGAT
GTAACGCCTAGCTCATATATTTCAAAAAGAATTGAATCAATACACGCGGCACTTAAGCACTTGTTGGGTAATCGTTTTAA
GGATAAGGCTGAGGTCTCCATTTCTGACGAAAATGGTGATGAAGAGTTAGAAGAAGCAAGTCAACAAGCAGTTACTCACA
ACTCATCTGCGTTATTAGTTACAAACATGCAATCTCGAGAACAAGCTATTCAACAGTTGCAACATGTGGCGGACTTTTTT
AGAGAAAGCGAGCCTCACTCACCAGTTTCTTACTCCATCGAACAAATTATTCGTTGGTGTGGAATGCCTCTGCCTGAATT
ACTGGCGGAACTAATCTCCGACGGAGACGCAAAACGAAGCTACTTCCGTTTGGTTGGCATAGCAGAACAAAATGAAAATT
AA