Detailed information of component protein


Summary

Component ID T6CP015703
Component protein type TssC
T6SS ID (Type) T6SS01253 experimental (Type i5)
Strain Vibrio parahaemolyticus strain 12-009A/1335
Replicon chromosome
Sequence Protein sequence (498 a.a.); Nucleotide sequence (1494 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) B5C29_RS20105
Coordinate (Strand) 18170..19663 (-)
NCBI ID 491606251
RefSeq NZ_MYFF01000494
Uniprot ID S5ITZ3_VIBPH, Q87HD1_VIBPA, A0A0D1RGP9_VIBPH
KEGG ID vpa:VPA1034, vpf:M634_23090
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 1.8e-129 64..372
VipB_2 PF18945.2 1.1e-43 383..492
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-497 MTTQVEKQLDPTVGEQTTSFLEQAIGATKQTEASRAEELIKTLTEEAMKGTVSWNKNLTVTFREAINLLDRQISEQLSEVMHHPELQKLEGSWRGLNYLVMNSETSSTLKIRMISITKKELHKDLSKAVEFDQSQIFKKVYESEFGSAGGEPYGALIGDYEFTNHPEDIESLRLMSNVAASGFSPFLSAASPALFGFDEWTELSKPRDLDKVFESLEYAQWRSFRESADSRFVSLTMPKVLARLPYGQATSPVEAFGFEEFDVDPVSGIAVNADHNDYCWMNSSYVLGVKLTDAFSKYGFCTAIRGAEGGGRVDNLPTHFFMSDDGDPDMKCPTEIGITDRREAELGKLGFLPLCHYKNTNYAVFFGAQTCQKPANHESPEVAANAAISARLPYMMATSRFAHYLKVMARDKIGSFMEAEDVESWLNRWILGYVNASEGGGQEIRAKYPLADARVQVKEIPGSPGSYNAVAWLKPWLQMEELTTSLRLVAKIPQSGG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9904 - -


  Protein sequence: 498 a.a.    

>T6CP015703 NZ_MYFF01000494:c19663-18170 [Vibrio parahaemolyticus] [TssC]
MTTQVEKQLDPTVGEQTTSFLEQAIGATKQTEASRAEELIKTLTEEAMKGTVSWNKNLTVTFREAINLLDRQISEQLSEV
MHHPELQKLEGSWRGLNYLVMNSETSSTLKIRMISITKKELHKDLSKAVEFDQSQIFKKVYESEFGSAGGEPYGALIGDY
EFTNHPEDIESLRLMSNVAASGFSPFLSAASPALFGFDEWTELSKPRDLDKVFESLEYAQWRSFRESADSRFVSLTMPKV
LARLPYGQATSPVEAFGFEEFDVDPVSGIAVNADHNDYCWMNSSYVLGVKLTDAFSKYGFCTAIRGAEGGGRVDNLPTHF
FMSDDGDPDMKCPTEIGITDRREAELGKLGFLPLCHYKNTNYAVFFGAQTCQKPANHESPEVAANAAISARLPYMMATSR
FAHYLKVMARDKIGSFMEAEDVESWLNRWILGYVNASEGGGQEIRAKYPLADARVQVKEIPGSPGSYNAVAWLKPWLQME
ELTTSLRLVAKIPQSGG*

  Nucleotide sequence: 1494 bp    

>T6CP015703 NZ_MYFF01000494:c19663-18170 [Vibrio parahaemolyticus] [TssC]
ATGACGACTCAAGTTGAAAAACAACTCGATCCTACAGTGGGTGAACAAACCACTTCATTTCTTGAACAGGCTATTGGTGC
GACGAAACAAACAGAAGCATCGAGAGCAGAAGAGCTGATCAAGACACTGACTGAAGAAGCGATGAAGGGGACGGTTTCTT
GGAATAAAAACCTAACCGTAACTTTCCGTGAAGCGATTAATTTGCTTGATAGACAGATTTCAGAGCAGCTTTCTGAAGTT
ATGCACCATCCTGAGCTACAAAAGTTAGAAGGCTCATGGCGTGGGCTGAATTACTTAGTCATGAATTCTGAGACAAGTTC
TACGCTGAAAATTCGCATGATCAGCATCACGAAGAAAGAGCTTCATAAAGACTTAAGTAAAGCGGTTGAATTCGATCAAA
GTCAAATCTTTAAAAAAGTGTACGAATCTGAATTTGGTAGCGCTGGTGGTGAACCGTATGGTGCTTTAATTGGTGACTAC
GAGTTTACAAACCATCCAGAAGATATTGAGTCTTTGCGTTTAATGTCGAATGTTGCTGCTTCGGGTTTCTCACCATTCTT
GTCTGCTGCTTCTCCTGCGCTATTTGGTTTTGATGAGTGGACAGAACTATCTAAACCGCGCGATTTAGATAAAGTCTTTG
AGTCGTTGGAATATGCGCAATGGCGCTCTTTCCGTGAAAGTGCAGATTCTCGTTTTGTAAGCTTAACGATGCCTAAAGTA
TTAGCCCGCCTACCATACGGCCAAGCTACGTCTCCTGTAGAAGCGTTTGGCTTTGAAGAGTTTGATGTGGATCCTGTGTC
GGGTATCGCCGTTAATGCTGATCACAATGATTATTGTTGGATGAACTCATCGTACGTGCTTGGCGTCAAACTAACGGATG
CATTTTCTAAGTATGGTTTCTGTACTGCTATTCGTGGCGCAGAGGGTGGTGGTCGAGTTGATAACCTACCAACACACTTC
TTCATGAGTGATGATGGTGACCCAGATATGAAGTGCCCAACGGAAATTGGCATTACAGACCGCCGTGAAGCGGAATTGGG
TAAACTGGGTTTCTTACCATTGTGTCACTACAAAAATACGAACTATGCCGTGTTCTTTGGTGCTCAAACTTGTCAAAAAC
CAGCAAATCATGAATCTCCAGAAGTGGCAGCAAACGCGGCAATTTCAGCAAGACTTCCTTACATGATGGCAACCTCTCGT
TTTGCACATTATTTGAAAGTAATGGCTCGAGACAAGATCGGTAGCTTTATGGAAGCAGAAGACGTTGAATCTTGGTTGAA
CCGTTGGATTCTTGGCTATGTGAACGCTTCTGAAGGTGGCGGTCAAGAAATTCGTGCGAAATACCCTCTTGCCGACGCTC
GCGTACAAGTTAAGGAAATTCCAGGTTCTCCTGGTTCTTACAACGCGGTTGCTTGGCTCAAGCCATGGCTTCAAATGGAA
GAGCTAACCACGTCTTTAAGACTCGTTGCTAAAATTCCTCAGTCGGGTGGCTAA