Detailed information of component protein


Summary

Component ID T6CP015700
Component protein type TssF
T6SS ID (Type) T6SS01253 experimental (Type i5)
Strain Vibrio parahaemolyticus strain 12-009A/1335
Replicon chromosome
Sequence Protein sequence (608 a.a.); Nucleotide sequence (1824 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) B5C29_RS20085
Coordinate (Strand) 13502..15325 (-)
NCBI ID 646403521
RefSeq NZ_MYFF01000494
Uniprot ID UPI0003FB2AF6
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 1.6e-187 1..603
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-607 MSEEFLKYYNRELAYLRHKGQEFGEQYPKIAARLRISEEQVEDPHVERLLEGCAFLTARIRQSLDNSYPQFTESLMGQLYPDFHAPIPSMSVIKLNCSESTTSSFAIPVGERVEVSAPGYQDCQFRTGYPTTMYPLDIISGSFENAPFKPTGSKWEHNAHSVLRCQLSAHDSESSINSMGIDCLRLYLNGQTQLTLKLYQMLFQSLIGLSIVLDGKEIMPLTKRHLQSVGFGDEEQVVPYSKRSFSGSRLLVEYLHFPEKFMFFDLIELGLDKLEIQGQVEICFYFDTSDDWLPKQVDEESVMVGCVPIVNLFKSTMEPKRLLPTEYEYQLSPQYQDAESNEVVSISDVTLRNWNKTYEHLPCYHSGEHTHYMSASEVYWLMRREDKNWAGGYDEPGRETYVSFVDKQYQLFSPESRDNWLMYVEAECCNRNLPQKIPFGGGLPKVQLPNVDDNFKSIRCLTSLSETLRPEMDESTRWQLTKLLTLNHFTEADGLATLKQTLNLYAFAGTAETKAVIDALVKLEFEHTTGRVSQKGKVGFAHGVKLILTVSDQILPKEQIFLLGSVLSVYFAQYAEINVFTQLEIKLKSTSSSFHVWPALTGDKVLL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9953 - -


  Protein sequence: 608 a.a.    

>T6CP015700 NZ_MYFF01000494:c15325-13502 [Vibrio parahaemolyticus] [TssF]
MSEEFLKYYNRELAYLRHKGQEFGEQYPKIAARLRISEEQVEDPHVERLLEGCAFLTARIRQSLDNSYPQFTESLMGQLY
PDFHAPIPSMSVIKLNCSESTTSSFAIPVGERVEVSAPGYQDCQFRTGYPTTMYPLDIISGSFENAPFKPTGSKWEHNAH
SVLRCQLSAHDSESSINSMGIDCLRLYLNGQTQLTLKLYQMLFQSLIGLSIVLDGKEIMPLTKRHLQSVGFGDEEQVVPY
SKRSFSGSRLLVEYLHFPEKFMFFDLIELGLDKLEIQGQVEICFYFDTSDDWLPKQVDEESVMVGCVPIVNLFKSTMEPK
RLLPTEYEYQLSPQYQDAESNEVVSISDVTLRNWNKTYEHLPCYHSGEHTHYMSASEVYWLMRREDKNWAGGYDEPGRET
YVSFVDKQYQLFSPESRDNWLMYVEAECCNRNLPQKIPFGGGLPKVQLPNVDDNFKSIRCLTSLSETLRPEMDESTRWQL
TKLLTLNHFTEADGLATLKQTLNLYAFAGTAETKAVIDALVKLEFEHTTGRVSQKGKVGFAHGVKLILTVSDQILPKEQI
FLLGSVLSVYFAQYAEINVFTQLEIKLKSTSSSFHVWPALTGDKVLL*

  Nucleotide sequence: 1824 bp    

>T6CP015700 NZ_MYFF01000494:c15325-13502 [Vibrio parahaemolyticus] [TssF]
ATGAGTGAAGAGTTTCTAAAATACTACAATCGTGAATTGGCCTATCTGCGACACAAAGGACAAGAGTTTGGCGAGCAATA
TCCTAAAATTGCGGCTAGGTTACGTATCAGCGAAGAACAAGTTGAAGACCCACATGTTGAACGTCTGTTGGAAGGTTGTG
CTTTTTTAACCGCTCGGATAAGACAAAGCCTGGATAACAGTTACCCACAGTTTACGGAATCACTGATGGGACAGTTATAT
CCGGACTTTCATGCGCCAATTCCTTCGATGTCAGTGATCAAATTGAACTGTTCAGAGTCAACCACTAGTTCATTTGCTAT
TCCTGTGGGTGAAAGAGTCGAAGTTAGTGCCCCTGGATATCAAGATTGCCAGTTTCGAACCGGTTACCCGACAACAATGT
ATCCACTCGATATTATCTCTGGTTCATTTGAGAACGCGCCTTTCAAGCCTACTGGCTCTAAGTGGGAGCACAATGCGCAC
TCTGTACTAAGGTGTCAGCTGAGTGCTCATGATTCAGAGTCCTCTATCAATTCTATGGGTATCGATTGTTTGCGTTTGTA
CTTAAATGGACAGACGCAATTAACACTCAAGCTATATCAAATGTTATTCCAAAGTTTGATTGGTCTTTCAATCGTGTTGG
ATGGTAAAGAAATCATGCCTCTAACTAAGAGGCATCTTCAATCGGTTGGTTTTGGGGACGAGGAGCAAGTCGTCCCTTAC
AGTAAGAGAAGTTTTTCGGGATCTCGTTTATTGGTCGAGTACCTTCATTTCCCAGAAAAATTCATGTTCTTTGACTTGAT
TGAGCTCGGCTTAGATAAGTTAGAGATTCAAGGGCAGGTCGAGATTTGTTTTTACTTCGATACAAGCGATGACTGGCTAC
CAAAGCAAGTAGACGAGGAAAGTGTCATGGTTGGCTGTGTTCCCATTGTAAATCTGTTCAAATCAACCATGGAACCTAAA
CGTCTCCTTCCAACAGAGTACGAGTATCAATTATCTCCTCAATACCAAGATGCAGAGAGTAATGAAGTTGTCTCGATTTC
TGATGTGACCTTGAGAAACTGGAACAAAACTTACGAGCACTTACCCTGCTACCATTCAGGAGAGCACACGCACTACATGA
GCGCGAGTGAAGTGTATTGGTTAATGAGACGAGAGGATAAAAACTGGGCCGGTGGCTACGATGAGCCTGGTCGAGAGACT
TATGTTTCTTTTGTTGATAAGCAATACCAGTTGTTCAGCCCTGAAAGCAGAGATAATTGGCTGATGTATGTGGAAGCTGA
GTGTTGTAATCGTAATTTGCCACAAAAAATTCCATTTGGTGGCGGGCTACCAAAGGTTCAGTTACCCAATGTTGATGATA
ATTTTAAATCAATCAGGTGCTTAACGTCTCTCTCCGAAACGCTTAGACCAGAGATGGATGAAAGCACACGATGGCAGCTT
ACCAAGCTATTAACATTGAACCATTTTACTGAAGCTGACGGCCTAGCAACGTTAAAACAAACATTGAACTTGTATGCATT
TGCAGGCACTGCCGAAACAAAAGCCGTTATAGATGCTCTAGTCAAGCTAGAGTTTGAACATACAACCGGTAGGGTTAGTC
AGAAAGGAAAAGTTGGTTTTGCACATGGAGTAAAGCTGATTCTAACAGTATCCGATCAGATACTGCCAAAAGAGCAGATC
TTTTTATTGGGTAGCGTGTTATCTGTTTACTTTGCTCAATATGCGGAGATTAATGTGTTTACGCAGTTAGAGATAAAGTT
GAAATCAACCAGCAGCTCCTTTCACGTATGGCCTGCGCTGACAGGTGATAAGGTGTTGTTATGA