Detailed information of component protein


Summary

Component ID T6CP015697
Component protein type TssD
T6SS ID (Type) T6SS01253 experimental (Type i5)
Strain Vibrio parahaemolyticus strain 12-009A/1335
Replicon chromosome
Sequence Protein sequence (160 a.a.); Nucleotide sequence (480 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) B5C29_RS20070
Coordinate (Strand) 9277..9756 (-)
NCBI ID 491518336
RefSeq NZ_MYFF01000494
Uniprot ID A0A2I3CRH4_VIBAX, S5J041_VIBPH, Q87HD8_VIBPA, A0A0T7E196_9VIBR, C0LZR3_VIBAL, D0X0J5_VIBAL
KEGG ID vag:N646_4398, vpf:M634_23055, vpa:VPA1027
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 1.2e-28 6..133

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-159 MQSNTYLKYADIKGEATAEQYKDLITLLSVDWSVGREISSYTGTAMDREASATRLYDLTITKLQDRSSPDLFKEATIGKGKPAVFHITKQGEKVEEIMKIELTDAMISNYSVSIQDDRPVETITISYTEMMMTVTPTDDKNNTSAPLVYGYSGVKGQQM



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9833 - -



  Protein sequence: 160 a.a.    

>T6CP015697 NZ_MYFF01000494:c9756-9277 [Vibrio parahaemolyticus] [TssD]
MQSNTYLKYADIKGEATAEQYKDLITLLSVDWSVGREISSYTGTAMDREASATRLYDLTITKLQDRSSPDLFKEATIGKG
KPAVFHITKQGEKVEEIMKIELTDAMISNYSVSIQDDRPVETITISYTEMMMTVTPTDDKNNTSAPLVYGYSGVKGQQM*

  Nucleotide sequence: 480 bp    

>T6CP015697 NZ_MYFF01000494:c9756-9277 [Vibrio parahaemolyticus] [TssD]
ATGCAGTCTAATACGTATCTTAAATACGCAGATATTAAAGGTGAAGCGACAGCGGAACAATATAAGGATTTAATTACACT
ACTATCTGTAGATTGGAGTGTTGGTCGTGAGATTTCTTCTTACACGGGTACAGCAATGGACCGTGAAGCAAGTGCAACAC
GCCTATATGATTTAACTATCACTAAACTTCAAGATCGTTCGTCTCCTGATCTATTCAAGGAAGCAACAATCGGTAAAGGT
AAACCTGCAGTATTCCACATCACTAAGCAGGGTGAAAAAGTTGAAGAAATCATGAAAATCGAACTGACTGATGCGATGAT
TTCTAACTACTCAGTATCGATTCAAGATGATCGCCCAGTAGAAACTATCACAATTTCATACACTGAAATGATGATGACAG
TGACACCTACTGATGACAAAAACAACACTTCTGCTCCGTTGGTTTACGGCTACAGCGGTGTTAAAGGTCAACAAATGTAA