Detailed information of component protein


Summary

Component ID T6CP015696
Component protein type TssI
T6SS ID (Type) T6SS01253 experimental (Type i5)
Strain Vibrio parahaemolyticus strain 12-009A/1335
Replicon chromosome
Sequence Protein sequence (612 a.a.); Nucleotide sequence (1836 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) B5C29_RS20065
Coordinate (Strand) 7384..9219 (-)
NCBI ID 646568991
RefSeq NZ_MYFF01000494
Uniprot ID UPI00041AFF39
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 1.6e-74 30..335
Phage_base_V PF04717.14 1.7e-17 381..461
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-611 MKKASQDNNFIRISSPFGKDALILNSFEYREGISELFSLRAKAYFNDQKNELNEIVGKEVTISVENSSRVSKSPRFFHGIVSAAKLEGQRVMNSHNGENYKNIEIIVEPKVKFAAYRNNCKIFQKKNIKDIISEVLSEHGVAFKFELKNTYPQYSYKVQYEESDLAFVQRLLAEEGLSFCFSHSKSSHVLDIFDDVSFYKPSPEFMVDFDTGSSESSHISAWNETQVLTTKASQKSGFNMLKPTSQPKNVAAGDTALFTVPASEYFEYLGETESDDQYSLRNTHAIESLQQNVYLCSGEASCRTFSVGKCFKFKKHEDKSRVGKEYVLASVTIFASVFNQTGLGGTASQGVRVAFTCVDSKTILRPAVTYPKPQIKGLQTAIVTGNKDGEVYVDKHGRIKVQFHWDRLGKYDVNSSCWIRVAQSIAGNGWGAVFHPRVGQEVIVEFVNGDPDQPIVTGALYNGSQLPPYSLPEKSSQSGFKSRSVQKGNANFNELRFEDKPGEEHIYLHAEKLFQMLVEDCVDIVVENNKVEKVTNDVTQDVGKNATLKVGENYTSDTGKVLSLNAGKSIEIKVGGASIQMSSSGEINIKGNKISINGSAIALKAGQISLN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9814 - -


  Protein sequence: 612 a.a.    

>T6CP015696 NZ_MYFF01000494:c9219-7384 [Vibrio parahaemolyticus] [TssI]
MKKASQDNNFIRISSPFGKDALILNSFEYREGISELFSLRAKAYFNDQKNELNEIVGKEVTISVENSSRVSKSPRFFHGI
VSAAKLEGQRVMNSHNGENYKNIEIIVEPKVKFAAYRNNCKIFQKKNIKDIISEVLSEHGVAFKFELKNTYPQYSYKVQY
EESDLAFVQRLLAEEGLSFCFSHSKSSHVLDIFDDVSFYKPSPEFMVDFDTGSSESSHISAWNETQVLTTKASQKSGFNM
LKPTSQPKNVAAGDTALFTVPASEYFEYLGETESDDQYSLRNTHAIESLQQNVYLCSGEASCRTFSVGKCFKFKKHEDKS
RVGKEYVLASVTIFASVFNQTGLGGTASQGVRVAFTCVDSKTILRPAVTYPKPQIKGLQTAIVTGNKDGEVYVDKHGRIK
VQFHWDRLGKYDVNSSCWIRVAQSIAGNGWGAVFHPRVGQEVIVEFVNGDPDQPIVTGALYNGSQLPPYSLPEKSSQSGF
KSRSVQKGNANFNELRFEDKPGEEHIYLHAEKLFQMLVEDCVDIVVENNKVEKVTNDVTQDVGKNATLKVGENYTSDTGK
VLSLNAGKSIEIKVGGASIQMSSSGEINIKGNKISINGSAIALKAGQISLN*

  Nucleotide sequence: 1836 bp    

>T6CP015696 NZ_MYFF01000494:c9219-7384 [Vibrio parahaemolyticus] [TssI]
ATGAAAAAAGCAAGTCAAGACAACAACTTTATCCGTATTTCTTCTCCGTTTGGAAAAGATGCTCTTATTCTCAATTCGTT
CGAATATAGAGAAGGGATCTCGGAGCTTTTTTCATTGCGTGCTAAAGCTTATTTTAATGATCAAAAAAATGAGCTCAATG
AAATCGTGGGTAAAGAAGTAACGATTTCAGTGGAAAATAGTAGTCGTGTTTCTAAAAGTCCGCGTTTTTTCCATGGCATT
GTCTCTGCTGCAAAGCTCGAAGGCCAGAGAGTGATGAATTCTCATAATGGAGAAAACTACAAAAATATTGAAATTATTGT
TGAACCGAAAGTTAAGTTCGCAGCGTACAGAAATAATTGTAAGATCTTTCAGAAGAAAAATATAAAAGACATTATTTCCG
AAGTGCTTTCAGAGCATGGTGTTGCATTTAAATTTGAACTAAAAAATACGTATCCCCAATATTCCTACAAAGTTCAGTAT
GAAGAATCTGATCTTGCTTTTGTTCAGCGCCTCCTAGCCGAAGAAGGGCTCTCTTTTTGCTTTAGTCACTCTAAATCATC
CCATGTCCTAGATATTTTTGATGATGTAAGCTTTTACAAACCCAGTCCTGAGTTTATGGTCGATTTCGATACAGGCAGTT
CAGAGTCGAGTCACATTTCTGCTTGGAACGAAACACAAGTTTTAACGACTAAAGCAAGCCAGAAGTCTGGTTTCAATATG
CTAAAACCAACCTCACAACCCAAAAACGTAGCCGCTGGTGATACTGCACTGTTTACAGTACCTGCGAGTGAGTATTTTGA
GTATCTGGGTGAAACAGAAAGTGACGATCAGTACTCGCTTCGAAACACTCACGCAATTGAATCCCTTCAACAGAACGTTT
ATCTATGTAGCGGAGAGGCGAGTTGTCGAACCTTTTCTGTGGGTAAATGTTTTAAGTTCAAAAAACACGAAGATAAATCG
CGAGTAGGAAAAGAATATGTCTTGGCCTCTGTGACGATTTTTGCTTCTGTGTTTAATCAAACTGGTCTGGGTGGCACCGC
TTCTCAAGGTGTTCGTGTTGCGTTTACTTGTGTGGACTCTAAAACCATTTTAAGGCCGGCGGTTACTTACCCTAAACCGC
AAATTAAAGGTCTTCAAACGGCCATTGTGACTGGTAATAAAGACGGTGAGGTATACGTTGATAAACATGGCAGAATAAAA
GTACAGTTCCATTGGGATCGTTTAGGTAAGTACGATGTAAATAGTTCGTGTTGGATTCGAGTTGCTCAAAGTATTGCCGG
AAATGGATGGGGTGCGGTGTTTCATCCTCGGGTAGGGCAAGAGGTTATCGTAGAGTTTGTGAATGGCGACCCAGATCAAC
CTATTGTCACGGGTGCGCTGTATAACGGGAGCCAGTTGCCCCCGTATTCTCTTCCAGAGAAAAGTTCTCAAAGCGGTTTT
AAGTCCCGCTCAGTTCAAAAAGGAAACGCAAATTTCAACGAGTTACGCTTTGAAGATAAACCTGGTGAAGAACACATTTA
CCTTCACGCAGAAAAGTTGTTCCAAATGTTAGTCGAAGACTGCGTAGATATTGTTGTTGAGAACAATAAAGTTGAGAAAG
TAACCAACGATGTCACTCAAGACGTTGGAAAAAATGCGACGTTAAAAGTGGGAGAAAACTATACCTCCGACACTGGCAAA
GTGCTGTCCCTCAATGCAGGGAAAAGTATTGAAATTAAAGTCGGTGGAGCCTCAATTCAAATGTCGAGTTCTGGCGAAAT
CAACATTAAGGGCAACAAGATTTCTATCAATGGCTCTGCAATCGCATTGAAAGCAGGACAAATCTCTTTGAATTAA