Detailed information of component protein
Summary
Component ID | T6CP015694 |
Component protein type | TssG |
T6SS ID (Type) | T6SS01252 (Type i5) |
Strain | Vibrio parahaemolyticus strain A3 |
Replicon | chromosome |
Sequence | Protein sequence (322 a.a.); Nucleotide sequence (966 bp) |
Reference |
External database links
Locus tag (Gene) | CGH00_RS20350 |
Coordinate (Strand) | 16007..16972 (+) |
NCBI ID | 922039643 |
RefSeq | NZ_NNQJ01000119 |
Uniprot ID | UPI0006A58CD7 |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
T6SS_TssG | PF06996.13 | 1.1e-69 | 11..306 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-321 | MSSEDFYRELKQRSLFEAIHLIEQELLKVESQIGTDALPKNEKLNLKVNASLGFENAQLVSTKPLGKDKLALETNLIGLTGEQGVLPQHYSELALHRLKEGDHAMVDFYDIFNHRLLSLYYRSWQLSQLTIQARAHAKNQRSPLTDCMSSLTGDGNDLALHYGGMYASPTRSKGALKSILECLSGCQIRIHEFQGQWMRLSKSEQTRLASKSMPEGQFAQLGAGASLGRKAWNINASTTIEFLPKESKQVKNLLPKTNTLKTIKRVAGDFIGKHKHVKWQLTTKHSLLPQVQISKQQGQLGVGSVLKKHERTEDRNITITV |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9908 | - | - |
Protein sequence: 322 a.a.
>T6CP015694 NZ_NNQJ01000119:16007-16972 [Vibrio parahaemolyticus] [TssG]
MSSEDFYRELKQRSLFEAIHLIEQELLKVESQIGTDALPKNEKLNLKVNASLGFENAQLVSTKPLGKDKLALETNLIGLT
GEQGVLPQHYSELALHRLKEGDHAMVDFYDIFNHRLLSLYYRSWQLSQLTIQARAHAKNQRSPLTDCMSSLTGDGNDLAL
HYGGMYASPTRSKGALKSILECLSGCQIRIHEFQGQWMRLSKSEQTRLASKSMPEGQFAQLGAGASLGRKAWNINASTTI
EFLPKESKQVKNLLPKTNTLKTIKRVAGDFIGKHKHVKWQLTTKHSLLPQVQISKQQGQLGVGSVLKKHERTEDRNITIT
V*
MSSEDFYRELKQRSLFEAIHLIEQELLKVESQIGTDALPKNEKLNLKVNASLGFENAQLVSTKPLGKDKLALETNLIGLT
GEQGVLPQHYSELALHRLKEGDHAMVDFYDIFNHRLLSLYYRSWQLSQLTIQARAHAKNQRSPLTDCMSSLTGDGNDLAL
HYGGMYASPTRSKGALKSILECLSGCQIRIHEFQGQWMRLSKSEQTRLASKSMPEGQFAQLGAGASLGRKAWNINASTTI
EFLPKESKQVKNLLPKTNTLKTIKRVAGDFIGKHKHVKWQLTTKHSLLPQVQISKQQGQLGVGSVLKKHERTEDRNITIT
V*
Nucleotide sequence: 966 bp
>T6CP015694 NZ_NNQJ01000119:16007-16972 [Vibrio parahaemolyticus] [TssG]
ATGAGCTCAGAGGACTTCTACCGCGAGCTAAAGCAACGTTCTTTGTTTGAAGCTATTCATCTTATTGAGCAAGAGCTTTT
GAAAGTTGAATCGCAAATTGGAACAGATGCATTACCAAAAAACGAGAAACTCAACTTAAAGGTCAATGCGTCTTTAGGCT
TTGAGAATGCGCAACTCGTTTCTACTAAACCACTAGGTAAAGATAAATTAGCGCTTGAGACAAATTTGATTGGCTTGACG
GGGGAGCAGGGTGTACTGCCTCAGCATTACAGTGAGCTTGCATTGCATCGACTGAAAGAAGGCGATCATGCGATGGTGGA
CTTCTATGACATTTTTAACCACCGGCTTTTATCCCTCTATTATCGAAGTTGGCAGTTGAGTCAGTTAACCATACAAGCGC
GTGCGCATGCAAAAAATCAGCGCTCCCCATTAACTGATTGCATGTCGTCATTGACTGGCGATGGGAATGATCTAGCACTG
CATTATGGCGGCATGTATGCATCTCCAACACGAAGTAAAGGTGCATTGAAGAGCATTTTGGAATGTTTGTCTGGTTGCCA
AATTCGTATTCACGAGTTTCAAGGTCAATGGATGCGACTGTCTAAATCTGAACAAACTCGTTTGGCATCGAAAAGTATGC
CCGAAGGCCAGTTTGCACAACTCGGTGCTGGTGCGTCACTAGGAAGAAAAGCCTGGAATATCAATGCAAGTACAACAATT
GAGTTTCTCCCAAAGGAAAGTAAGCAAGTCAAAAATCTATTACCCAAGACCAATACATTGAAAACGATAAAACGGGTAGC
AGGTGACTTCATTGGCAAACACAAGCACGTTAAGTGGCAACTTACGACTAAACATAGTCTATTGCCTCAAGTTCAAATAT
CTAAGCAACAAGGTCAGTTAGGTGTCGGCTCTGTACTGAAAAAACATGAACGTACGGAAGATCGCAACATAACAATTACG
GTTTAA
ATGAGCTCAGAGGACTTCTACCGCGAGCTAAAGCAACGTTCTTTGTTTGAAGCTATTCATCTTATTGAGCAAGAGCTTTT
GAAAGTTGAATCGCAAATTGGAACAGATGCATTACCAAAAAACGAGAAACTCAACTTAAAGGTCAATGCGTCTTTAGGCT
TTGAGAATGCGCAACTCGTTTCTACTAAACCACTAGGTAAAGATAAATTAGCGCTTGAGACAAATTTGATTGGCTTGACG
GGGGAGCAGGGTGTACTGCCTCAGCATTACAGTGAGCTTGCATTGCATCGACTGAAAGAAGGCGATCATGCGATGGTGGA
CTTCTATGACATTTTTAACCACCGGCTTTTATCCCTCTATTATCGAAGTTGGCAGTTGAGTCAGTTAACCATACAAGCGC
GTGCGCATGCAAAAAATCAGCGCTCCCCATTAACTGATTGCATGTCGTCATTGACTGGCGATGGGAATGATCTAGCACTG
CATTATGGCGGCATGTATGCATCTCCAACACGAAGTAAAGGTGCATTGAAGAGCATTTTGGAATGTTTGTCTGGTTGCCA
AATTCGTATTCACGAGTTTCAAGGTCAATGGATGCGACTGTCTAAATCTGAACAAACTCGTTTGGCATCGAAAAGTATGC
CCGAAGGCCAGTTTGCACAACTCGGTGCTGGTGCGTCACTAGGAAGAAAAGCCTGGAATATCAATGCAAGTACAACAATT
GAGTTTCTCCCAAAGGAAAGTAAGCAAGTCAAAAATCTATTACCCAAGACCAATACATTGAAAACGATAAAACGGGTAGC
AGGTGACTTCATTGGCAAACACAAGCACGTTAAGTGGCAACTTACGACTAAACATAGTCTATTGCCTCAAGTTCAAATAT
CTAAGCAACAAGGTCAGTTAGGTGTCGGCTCTGTACTGAAAAAACATGAACGTACGGAAGATCGCAACATAACAATTACG
GTTTAA