Detailed information of component protein


Summary

Component ID T6CP015693
Component protein type TssF
T6SS ID (Type) T6SS01252 experimental (Type i5)
Strain Vibrio parahaemolyticus strain A3
Replicon chromosome
Sequence Protein sequence (608 a.a.); Nucleotide sequence (1824 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) CGH00_RS20345
Coordinate (Strand) 14187..16010 (+)
NCBI ID 491606259
RefSeq NZ_NNQJ01000119
Uniprot ID Q87HD5_VIBPA
KEGG ID vpa:VPA1030
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 1.3e-187 1..603
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-607 MSEEFLKYYNRELAYLRHKGQEFGEQYPKIAARLRISEEQVEDPHVERLLEGCAFLTARIRQSLDNSYPQFTESLMGQLYPDFHAPIPSMSVIKLNCSESTTSSFAIPVGERVEVSAPGYQDCQFRTGYPTTMYPLDIISGSFENAPFKPTGSKWEHNAHSVLRCQLSAHDSESSINSMGIDCLRLYLNGQTQLTLKLYQMLFQSLIGLSIVLDGKEIMPLTKRHLQSVGFGDEEQVVPYSKRSFSGSRLLVEYLHFPEKFMFFDLIELGLDKLEIQGQVEICFYFDTSDDWLPKQVDEESVMVGCVPIVNLFKSTMEPKRLLPTEYEYQLSPQYQDAESNEVVSISDVTLRNWNKTYEHLPCYHSGEHTHYMSASEVYWLMRREDKNWAGGYDEPGRETYVSFVDKQYQLFSPESRDNWLMYVEAECCNRNLPQKIPFGGGLPKVQLPNVDDNFKSIRCLTSLSETLRPEMDESTRWQLTKLLTLNHFTEADGLATLKQTLNLYAFAGTAETKAVIDALVKLEFEHTTGRVSQKGKVGFAHGVKLVLTVSDQILPKEQIFLLGSVLSVYFAQYAEINVFTQLEIKLKSTSSSFHVWPALTGDKVLL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9953 - -


  Protein sequence: 608 a.a.    

>T6CP015693 NZ_NNQJ01000119:14187-16010 [Vibrio parahaemolyticus] [TssF]
MSEEFLKYYNRELAYLRHKGQEFGEQYPKIAARLRISEEQVEDPHVERLLEGCAFLTARIRQSLDNSYPQFTESLMGQLY
PDFHAPIPSMSVIKLNCSESTTSSFAIPVGERVEVSAPGYQDCQFRTGYPTTMYPLDIISGSFENAPFKPTGSKWEHNAH
SVLRCQLSAHDSESSINSMGIDCLRLYLNGQTQLTLKLYQMLFQSLIGLSIVLDGKEIMPLTKRHLQSVGFGDEEQVVPY
SKRSFSGSRLLVEYLHFPEKFMFFDLIELGLDKLEIQGQVEICFYFDTSDDWLPKQVDEESVMVGCVPIVNLFKSTMEPK
RLLPTEYEYQLSPQYQDAESNEVVSISDVTLRNWNKTYEHLPCYHSGEHTHYMSASEVYWLMRREDKNWAGGYDEPGRET
YVSFVDKQYQLFSPESRDNWLMYVEAECCNRNLPQKIPFGGGLPKVQLPNVDDNFKSIRCLTSLSETLRPEMDESTRWQL
TKLLTLNHFTEADGLATLKQTLNLYAFAGTAETKAVIDALVKLEFEHTTGRVSQKGKVGFAHGVKLVLTVSDQILPKEQI
FLLGSVLSVYFAQYAEINVFTQLEIKLKSTSSSFHVWPALTGDKVLL*

  Nucleotide sequence: 1824 bp    

>T6CP015693 NZ_NNQJ01000119:14187-16010 [Vibrio parahaemolyticus] [TssF]
ATGAGTGAAGAGTTTCTAAAATACTACAATCGTGAATTGGCCTATCTGCGACACAAAGGGCAAGAGTTTGGCGAGCAATA
TCCTAAAATTGCGGCTAGGTTACGTATCAGCGAAGAACAAGTTGAAGACCCACATGTTGAACGTCTGTTGGAAGGTTGTG
CTTTTTTAACCGCTCGGATAAGACAAAGTCTGGATAACAGTTACCCACAGTTTACGGAATCACTGATGGGACAGCTATAT
CCGGACTTTCATGCGCCAATTCCTTCGATGTCCGTGATCAAATTGAACTGTTCGGAGTCAACCACTAGTTCATTTGCTAT
TCCTGTGGGTGAAAGAGTCGAAGTTAGTGCCCCTGGATATCAAGATTGCCAGTTTCGAACCGGTTACCCGACAACAATGT
ATCCACTCGATATTATCTCTGGTTCATTTGAGAACGCGCCTTTCAAGCCTACTGGCTCTAAGTGGGAGCATAATGCGCAC
TCTGTACTAAGGTGTCAGCTGAGTGCTCATGATTCAGAGTCCTCTATCAATTCCATGGGTATCGATTGTTTGCGTTTGTA
CTTAAATGGACAGACGCAATTAACACTCAAGCTATATCAAATGTTATTCCAAAGTTTGATTGGTCTTTCAATCGTATTGG
ATGGTAAAGAAATCATGCCTCTAACTAAGAGGCATCTTCAATCGGTTGGTTTTGGGGACGAGGAACAAGTCGTCCCTTAC
AGTAAGAGAAGTTTTTCGGGATCTCGTTTATTGGTCGAGTACCTTCATTTCCCAGAAAAATTCATGTTCTTTGACTTGAT
CGAGCTCGGCTTAGATAAGTTAGAGATTCAAGGGCAGGTCGAGATTTGCTTTTACTTCGATACAAGCGATGACTGGCTAC
CAAAGCAAGTAGACGAGGAAAGTGTCATGGTTGGCTGTGTTCCCATTGTAAATCTGTTCAAATCAACCATGGAACCTAAA
CGTCTCCTTCCAACTGAGTACGAGTATCAATTATCTCCTCAGTACCAAGATGCAGAGAGTAATGAAGTTGTCTCGATTTC
TGATGTTACCTTGAGAAACTGGAACAAAACTTACGAGCACTTACCCTGCTACCATTCAGGAGAGCACACGCACTACATGA
GCGCGAGTGAAGTGTATTGGTTAATGAGACGAGAGGATAAAAACTGGGCCGGTGGCTACGATGAGCCTGGTCGAGAGACT
TATGTTTCTTTTGTTGATAAGCAATACCAGTTGTTCAGCCCTGAAAGCAGAGATAATTGGCTGATGTATGTGGAAGCTGA
GTGTTGCAATCGTAATTTGCCACAAAAAATTCCATTTGGTGGCGGGCTACCAAAGGTTCAGTTACCCAATGTTGATGATA
ATTTTAAATCAATCAGGTGCTTAACGTCTCTCTCCGAAACGCTTAGGCCAGAGATGGATGAAAGCACACGATGGCAGCTT
ACCAAGCTATTAACATTGAACCATTTTACTGAAGCTGACGGCTTAGCAACGTTAAAACAAACATTGAACTTATATGCATT
TGCAGGCACTGCCGAAACAAAAGCCGTTATAGATGCTCTAGTCAAGCTAGAGTTTGAACATACAACCGGTAGGGTTAGTC
AGAAAGGAAAAGTTGGTTTTGCACATGGAGTAAAGCTGGTTCTAACAGTATCCGATCAGATACTGCCAAAAGAGCAGATC
TTTTTATTGGGTAGCGTGTTATCTGTTTACTTTGCTCAATATGCGGAGATTAACGTGTTTACGCAGTTAGAGATAAAGTT
GAAATCAACCAGCAGCTCCTTTCACGTATGGCCTGCGCTGACAGGTGATAAGGTGTTGTTATGA