Detailed information of component protein
Summary
| Component ID | T6CP015692 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS01252  (Type i5) |
| Strain | Vibrio parahaemolyticus strain A3 |
| Replicon | chromosome |
| Sequence | Protein sequence (155 a.a.); Nucleotide sequence (465 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | CGH00_RS20340 |
| Coordinate (Strand) | 13726..14190 (+) |
| NCBI ID | 505126202 |
| RefSeq | NZ_NNQJ01000119 |
| Uniprot ID | S5IXX4_VIBPH, A0A0F2HVX2_VIBPH |
| KEGG ID | vpf:M634_23075 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 5.2e-18 | 35..130 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-154 | MALTVSLLDKLIDSDPTTREEKDFPVSQQHMLNGLLRDLESMLNSRIGWKNIHEDFLEVRYSILNYGLPDFSSMPYSSQDGQSQLCDIVYEAIREFEPRLRNPHVQISDEKNAIDRTLRLEISATCLIDNDIHELKFNSEVEPVNLGMKLSRAK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9951 | - | - |
Protein sequence: 155 a.a.
>T6CP015692 NZ_NNQJ01000119:13726-14190 [Vibrio parahaemolyticus] [TssE]
MALTVSLLDKLIDSDPTTREEKDFPVSQQHMLNGLLRDLESMLNSRIGWKNIHEDFLEVRYSILNYGLPDFSSMPYSSQD
GQSQLCDIVYEAIREFEPRLRNPHVQISDEKNAIDRTLRLEISATCLIDNDIHELKFNSEVEPVNLGMKLSRAK*
MALTVSLLDKLIDSDPTTREEKDFPVSQQHMLNGLLRDLESMLNSRIGWKNIHEDFLEVRYSILNYGLPDFSSMPYSSQD
GQSQLCDIVYEAIREFEPRLRNPHVQISDEKNAIDRTLRLEISATCLIDNDIHELKFNSEVEPVNLGMKLSRAK*
Nucleotide sequence: 465 bp
>T6CP015692 NZ_NNQJ01000119:13726-14190 [Vibrio parahaemolyticus] [TssE]
ATGGCTTTAACGGTTTCACTGCTAGACAAGTTGATTGATAGCGACCCAACTACCAGAGAAGAAAAAGATTTTCCTGTCAG
TCAGCAACACATGCTCAATGGTTTATTAAGAGACTTAGAGTCGATGCTTAATAGTCGTATTGGTTGGAAAAATATTCACG
AAGACTTTTTAGAAGTTAGATACTCAATTCTGAACTATGGGTTACCTGATTTTTCATCAATGCCTTATAGCAGCCAAGAT
GGACAAAGTCAGTTGTGTGACATCGTTTATGAAGCTATTCGGGAGTTTGAACCTCGGTTAAGAAATCCGCACGTTCAAAT
TTCTGATGAAAAAAATGCGATAGATCGAACCTTACGGTTAGAAATTAGCGCAACTTGTTTGATTGATAATGACATCCACG
AGTTGAAATTCAATTCGGAAGTCGAGCCAGTGAACTTAGGAATGAAGTTGAGTCGAGCGAAATGA
ATGGCTTTAACGGTTTCACTGCTAGACAAGTTGATTGATAGCGACCCAACTACCAGAGAAGAAAAAGATTTTCCTGTCAG
TCAGCAACACATGCTCAATGGTTTATTAAGAGACTTAGAGTCGATGCTTAATAGTCGTATTGGTTGGAAAAATATTCACG
AAGACTTTTTAGAAGTTAGATACTCAATTCTGAACTATGGGTTACCTGATTTTTCATCAATGCCTTATAGCAGCCAAGAT
GGACAAAGTCAGTTGTGTGACATCGTTTATGAAGCTATTCGGGAGTTTGAACCTCGGTTAAGAAATCCGCACGTTCAAAT
TTCTGATGAAAAAAATGCGATAGATCGAACCTTACGGTTAGAAATTAGCGCAACTTGTTTGATTGATAATGACATCCACG
AGTTGAAATTCAATTCGGAAGTCGAGCCAGTGAACTTAGGAATGAAGTTGAGTCGAGCGAAATGA