Detailed information of component protein


Summary

Component ID T6CP015686
Component protein type TssM
T6SS ID (Type) T6SS01252 experimental (Type i5)
Strain Vibrio parahaemolyticus strain A3
Replicon chromosome
Sequence Protein sequence (1173 a.a.); Nucleotide sequence (3519 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) CGH00_RS20300
Coordinate (Strand) 3191..6709 (+)
NCBI ID 1693705921
RefSeq NZ_NNQJ01000119
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 3e-86 193..450
IcmF-related PF06761.14 3.9e-76 504..802
IcmF_C PF06744.14 7.9e-18 1049..1149
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-12 MSIKEIGRVFTQ
Transmembrane helix 13-32 RWFLGLVGVAACSIFIWVVG
Outside 33-46 PLITVAGYEPLKSD
Transmembrane helix 47-64 FQRLVTILVIVFAWALIN
Inside 65-445 LTKQHKQKVREDESIQTLLEVDSQSDKEAASEIDVMRDRIEQAIKVVTKTHKGKRSLYDLPWYVLIGPPGTGKTTVLKQSGLEFPLAESLGADSIAGVGGTRHCDWWFANKAVLIDTAGRYTTQDSQEEVDSKAWHGFLGLLKKYRTQRPINGAIVTISLASMMSQTRTERSLHARSIKSRLQELKNQLGMQFPIYVLLTKMDLVAGFNEFFADLSKEEREELFGFMFPREVDDERGVISLFNKEFHGMLERLDARMLRILETEDDLEKRTLIFEFPKQLRVLQANLDEFLSEIFAQNTFEEPALIRGVFLLSSVQEGIPVDRLMSESTNGLGLGRLLLATNVNSSHSYFVKNLFERVIFKEQLLGTVNRHYQKQSGWMRT
Transmembrane helix 446-468 GIYVGCVGVLVGASALWFLSYQW
Outside 469-1172 NSKLIVDTNNQANHIEAMIGAESLDFESDVISAVDTLDKIMMLPLGKNSEYGHSDAVKKFGLYQGDKVSQAANNAYSDALSQHFATLLSESLVSEMEANKHHREYLYETLKTYLMLFNPEKYQQEEVIAWFNFYFERQYPGELNKELRERLLVHTKNLLENDEKGFSMDATAISAAREVLTQMSLPERAYQRMKMQFAKSHVPSFRLTDVLGPKGLEQFERASGKPLSQGISGFYTYNGFHSIFQIQINRTVKGLMEENWVYGDDLKAHEIDHDSAIQGVQARYYQDYVNEWKTLIEDIQLKQAPSLALATEQSRVLSGVERPIESLLRAIQKEVGLSKVTLSENQKAATEVAGKVAKVKFSNTADKLDMYLPEENGFNVALPGKEVESHFTEILRLSEQDFDDIQQAMVNLRSYLSDLSSSGDNQKIAYKSILDGTVTQDVAASFARAKDLLPKPFNQWLGELSQESVKFAESGSKDHLNQLWVTNVVRPYQRTIAGRYPFEPNATKEVRLKDFQRFFGYGGTLDSFFQEYLEPFVDTSKSRWRLEKEIGVRPETLAVFQRAKRIRQSFFESDNSLRVEFGMKPVYLDQHITRFILELGDQDLVYKHGPARSKELRWPSGQDQTRIVFTPPESKREIAHTYEGEWGIFKLLDQSLKARPESRNDNIVMIDLKGNKVQLELIPSSAINPFWSNEMERFRCPQTL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.6736 - -


  Protein sequence: 1173 a.a.    

>T6CP015686 NZ_NNQJ01000119:3191-6709 [Vibrio parahaemolyticus] [TssM]
MSIKEIGRVFTQRWFLGLVGVAACSIFIWVVGPLITVAGYEPLKSDFQRLVTILVIVFAWALINLTKQHKQKVREDESIQ
TLLEVDSQSDKEAASEIDVMRDRIEQAIKVVTKTHKGKRSLYDLPWYVLIGPPGTGKTTVLKQSGLEFPLAESLGADSIA
GVGGTRHCDWWFANKAVLIDTAGRYTTQDSQEEVDSKAWHGFLGLLKKYRTQRPINGAIVTISLASMMSQTRTERSLHAR
SIKSRLQELKNQLGMQFPIYVLLTKMDLVAGFNEFFADLSKEEREELFGFMFPREVDDERGVISLFNKEFHGMLERLDAR
MLRILETEDDLEKRTLIFEFPKQLRVLQANLDEFLSEIFAQNTFEEPALIRGVFLLSSVQEGIPVDRLMSESTNGLGLGR
LLLATNVNSSHSYFVKNLFERVIFKEQLLGTVNRHYQKQSGWMRTGIYVGCVGVLVGASALWFLSYQWNSKLIVDTNNQA
NHIEAMIGAESLDFESDVISAVDTLDKIMMLPLGKNSEYGHSDAVKKFGLYQGDKVSQAANNAYSDALSQHFATLLSESL
VSEMEANKHHREYLYETLKTYLMLFNPEKYQQEEVIAWFNFYFERQYPGELNKELRERLLVHTKNLLENDEKGFSMDATA
ISAAREVLTQMSLPERAYQRMKMQFAKSHVPSFRLTDVLGPKGLEQFERASGKPLSQGISGFYTYNGFHSIFQIQINRTV
KGLMEENWVYGDDLKAHEIDHDSAIQGVQARYYQDYVNEWKTLIEDIQLKQAPSLALATEQSRVLSGVERPIESLLRAIQ
KEVGLSKVTLSENQKAATEVAGKVAKVKFSNTADKLDMYLPEENGFNVALPGKEVESHFTEILRLSEQDFDDIQQAMVNL
RSYLSDLSSSGDNQKIAYKSILDGTVTQDVAASFARAKDLLPKPFNQWLGELSQESVKFAESGSKDHLNQLWVTNVVRPY
QRTIAGRYPFEPNATKEVRLKDFQRFFGYGGTLDSFFQEYLEPFVDTSKSRWRLEKEIGVRPETLAVFQRAKRIRQSFFE
SDNSLRVEFGMKPVYLDQHITRFILELGDQDLVYKHGPARSKELRWPSGQDQTRIVFTPPESKREIAHTYEGEWGIFKLL
DQSLKARPESRNDNIVMIDLKGNKVQLELIPSSAINPFWSNEMERFRCPQTL*

  Nucleotide sequence: 3519 bp    

>T6CP015686 NZ_NNQJ01000119:3191-6709 [Vibrio parahaemolyticus] [TssM]
ATGAGTATTAAAGAAATAGGCAGAGTATTTACCCAAAGATGGTTTCTTGGTTTAGTCGGTGTAGCCGCGTGCTCCATTTT
TATTTGGGTTGTGGGTCCTCTGATCACGGTTGCAGGTTACGAGCCACTTAAAAGTGATTTTCAACGTTTAGTTACGATCT
TAGTGATTGTTTTTGCTTGGGCGCTTATCAACTTAACAAAGCAGCACAAACAGAAAGTTAGAGAAGACGAAAGTATTCAG
ACGTTGCTTGAAGTAGACAGTCAATCAGACAAAGAAGCCGCCAGTGAAATTGACGTAATGCGCGATCGTATAGAGCAAGC
GATCAAAGTTGTGACGAAAACGCATAAAGGAAAGCGTAGTTTGTACGATTTACCTTGGTACGTTCTGATTGGTCCTCCTG
GAACAGGTAAAACCACGGTTCTAAAGCAATCTGGCTTGGAATTTCCGTTAGCTGAGAGCTTAGGAGCTGACTCTATAGCT
GGTGTAGGTGGAACACGTCACTGTGATTGGTGGTTTGCTAATAAAGCAGTACTTATTGATACAGCAGGACGTTACACCAC
GCAAGATAGTCAAGAAGAGGTTGACTCTAAAGCTTGGCACGGTTTCTTGGGGTTGCTTAAGAAATACCGCACTCAAAGGC
CTATCAATGGCGCTATCGTAACGATCAGCCTAGCAAGTATGATGTCTCAAACTCGTACGGAGCGTAGCTTACATGCCAGA
TCAATAAAATCTCGCCTTCAGGAACTCAAAAATCAGTTGGGTATGCAATTCCCAATCTATGTTCTGCTGACGAAAATGGA
TCTGGTTGCTGGCTTTAATGAATTTTTTGCTGATTTAAGTAAAGAAGAGCGTGAGGAACTTTTTGGATTTATGTTCCCAC
GAGAAGTTGATGACGAACGTGGTGTTATTTCTCTATTCAATAAAGAGTTTCACGGCATGTTGGAGAGGCTCGATGCGCGC
ATGTTACGTATATTAGAAACTGAAGATGACTTAGAAAAGCGCACGCTAATATTCGAATTTCCAAAACAGCTGCGAGTTTT
ACAAGCAAACTTAGATGAGTTTTTGTCTGAGATATTTGCGCAGAACACGTTTGAAGAGCCAGCCCTTATTCGCGGTGTTT
TCTTGCTTAGCTCTGTACAAGAAGGCATTCCTGTTGATCGACTGATGAGTGAATCAACTAATGGATTGGGACTAGGGAGG
TTGCTTTTAGCGACAAACGTTAACAGTTCGCATAGCTATTTTGTTAAAAATCTTTTTGAGCGAGTCATCTTTAAAGAGCA
ATTATTAGGTACCGTTAACCGCCACTATCAAAAGCAATCTGGATGGATGCGTACGGGCATATACGTGGGTTGTGTTGGTG
TTCTTGTTGGTGCTTCTGCTCTTTGGTTCCTGAGTTATCAATGGAATTCAAAGTTAATTGTCGATACCAATAACCAAGCA
AATCATATTGAAGCGATGATAGGTGCAGAGAGCCTTGATTTTGAATCGGACGTTATCAGTGCTGTAGACACGTTAGACAA
GATCATGATGTTGCCACTAGGGAAAAATAGTGAATATGGTCATTCTGATGCAGTGAAAAAGTTTGGTCTGTATCAAGGTG
ACAAAGTTTCTCAAGCAGCAAATAACGCGTATTCAGATGCTCTTTCTCAACACTTTGCTACTCTGCTGTCAGAGAGTTTG
GTCTCGGAAATGGAAGCGAATAAGCACCATCGTGAATACTTATACGAGACGTTAAAGACGTATTTAATGTTGTTTAATCC
GGAAAAGTATCAACAAGAAGAGGTAATTGCTTGGTTCAACTTCTACTTTGAACGTCAGTATCCAGGAGAGTTAAACAAAG
AGTTACGTGAGCGTTTGCTAGTGCATACTAAAAACTTACTAGAGAACGACGAGAAAGGCTTCTCAATGGATGCGACTGCT
ATTAGTGCAGCACGAGAAGTTCTAACGCAAATGTCACTTCCAGAGCGTGCATATCAGCGTATGAAGATGCAGTTTGCTAA
AAGTCACGTTCCGTCTTTCCGTTTAACAGACGTGTTAGGACCTAAAGGTTTAGAACAATTTGAGCGAGCAAGTGGAAAAC
CTCTATCGCAAGGTATTTCCGGTTTTTATACCTACAACGGTTTTCACAGCATTTTCCAAATTCAGATTAATCGCACCGTC
AAAGGTTTGATGGAAGAAAACTGGGTGTATGGGGATGATCTAAAAGCTCATGAAATTGATCATGATAGTGCTATTCAGGG
GGTTCAAGCCCGCTATTATCAAGATTATGTCAATGAGTGGAAAACTCTGATAGAGGATATTCAGCTTAAACAAGCTCCGA
GTTTGGCTTTAGCAACAGAGCAATCAAGAGTTTTATCCGGTGTAGAAAGACCAATTGAATCACTTCTGCGTGCAATACAA
AAGGAAGTGGGGTTATCGAAAGTAACGTTATCGGAAAATCAAAAGGCAGCAACGGAAGTCGCAGGAAAGGTTGCAAAAGT
GAAGTTTTCTAATACGGCAGACAAACTCGATATGTATTTGCCTGAAGAGAATGGATTTAATGTTGCTCTACCAGGTAAAG
AAGTTGAATCCCATTTCACCGAAATCTTACGACTTAGTGAACAAGACTTTGATGATATTCAGCAAGCGATGGTGAATTTG
CGTTCGTACTTATCTGATTTGTCTAGCTCAGGGGACAATCAAAAAATTGCTTACAAAAGCATATTGGATGGAACGGTAAC
TCAGGATGTTGCTGCCTCCTTTGCTAGAGCAAAAGATCTCTTACCAAAACCGTTTAATCAATGGTTGGGAGAGTTGTCAC
AGGAATCGGTTAAGTTTGCAGAAAGCGGCTCTAAAGATCATCTAAATCAACTTTGGGTGACTAATGTAGTGCGTCCTTAT
CAGCGGACTATAGCAGGTAGATACCCATTTGAACCTAATGCAACGAAGGAAGTTCGTCTAAAGGACTTTCAACGATTCTT
CGGGTACGGTGGTACGTTGGACTCGTTCTTCCAAGAATATCTGGAGCCGTTTGTTGACACGTCTAAGAGTCGTTGGAGAC
TAGAAAAAGAAATCGGTGTAAGGCCCGAGACGCTTGCGGTTTTTCAAAGAGCAAAACGCATTAGACAATCGTTCTTTGAA
TCAGATAACTCGCTACGAGTCGAGTTTGGTATGAAACCCGTATATCTAGATCAACACATTACTCGATTTATCCTAGAGCT
AGGTGACCAAGACTTGGTTTATAAGCACGGTCCTGCGAGATCGAAGGAACTTCGCTGGCCATCGGGTCAAGATCAGACGC
GTATTGTGTTTACACCGCCCGAATCAAAACGAGAAATTGCTCATACCTATGAAGGGGAATGGGGCATTTTCAAACTATTG
GACCAATCACTCAAGGCTCGACCAGAGTCCCGCAACGACAACATTGTCATGATCGATTTGAAGGGGAACAAGGTTCAGCT
TGAGTTGATTCCATCTAGTGCAATCAACCCATTTTGGTCTAATGAGATGGAGAGGTTCAGATGTCCGCAAACCTTGTAA