Detailed information of component protein


Summary

Component ID T6CP015685
Component protein type TssL
T6SS ID (Type) T6SS01252 experimental (Type i5)
Strain Vibrio parahaemolyticus strain A3
Replicon chromosome
Sequence Protein sequence (431 a.a.); Nucleotide sequence (1293 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) CGH00_RS20295
Coordinate (Strand) 1883..3175 (+)
NCBI ID 516016889
RefSeq NZ_NNQJ01000119
Uniprot ID UPI000315C930
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 1.1e-55 50..252
OmpA PF00691.22 2e-13 322..420
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-229 MEQTIVKPTPGGRAAVSKAQPQRSADSTVVISKSPELVNNDSVVAYGDNPLLAEANGLLSIIGQIRATATHSDPLFLKETLAQKLRDYENRLRQHDVDLETIDTARYCLCCSLDEAVLNTNWGSQSFWTHDSLLSSFYASSQGGEAFFKHLDSCLAHPESHLDLLELMYVCLSLGFIGQYRLEKNGLEAHRRLRKQVVSVLKSHGRGVQQELSNKVEQHILAGAQVSER
Transmembrane helix 230-252 APLWVVCSVTSALLVCIFMYFSY
Inside 253-430 ELNKASNQTFAQLVNLIQPTPAVSNPMVESKSAPIAERISMYLATEIGKDLVTVEALQDRVRISLKAQDLFESGSASVVAYIQPVISKVARTLEATQGKIIITGHTDDRPIFTSKYPSNWHLSLARATSLSEQLIANSALKGRVIPEGLGDARPLVENDSEENRAMNRRIEIDLIVGN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9408 - -


  Protein sequence: 431 a.a.    

>T6CP015685 NZ_NNQJ01000119:1883-3175 [Vibrio parahaemolyticus] [TssL]
MEQTIVKPTPGGRAAVSKAQPQRSADSTVVISKSPELVNNDSVVAYGDNPLLAEANGLLSIIGQIRATATHSDPLFLKET
LAQKLRDYENRLRQHDVDLETIDTARYCLCCSLDEAVLNTNWGSQSFWTHDSLLSSFYASSQGGEAFFKHLDSCLAHPES
HLDLLELMYVCLSLGFIGQYRLEKNGLEAHRRLRKQVVSVLKSHGRGVQQELSNKVEQHILAGAQVSERAPLWVVCSVTS
ALLVCIFMYFSYELNKASNQTFAQLVNLIQPTPAVSNPMVESKSAPIAERISMYLATEIGKDLVTVEALQDRVRISLKAQ
DLFESGSASVVAYIQPVISKVARTLEATQGKIIITGHTDDRPIFTSKYPSNWHLSLARATSLSEQLIANSALKGRVIPEG
LGDARPLVENDSEENRAMNRRIEIDLIVGN*

  Nucleotide sequence: 1293 bp    

>T6CP015685 NZ_NNQJ01000119:1883-3175 [Vibrio parahaemolyticus] [TssL]
ATGGAACAGACGATAGTAAAACCTACTCCTGGCGGAAGAGCGGCTGTATCTAAAGCTCAGCCTCAAAGATCAGCAGACAG
TACTGTTGTGATATCCAAAAGCCCTGAGTTGGTTAACAACGATTCAGTTGTTGCTTATGGAGATAATCCACTATTGGCAG
AAGCTAATGGTCTACTTTCGATTATTGGACAAATCAGAGCAACAGCTACTCATTCCGATCCTTTGTTTCTTAAAGAAACG
CTCGCGCAAAAACTTAGGGATTATGAGAATCGTCTGCGTCAACATGATGTTGACTTGGAAACCATTGATACCGCACGTTA
TTGTCTGTGCTGTTCTTTAGACGAAGCAGTATTGAATACCAATTGGGGGAGTCAATCGTTTTGGACACATGATTCTCTGT
TGAGTTCTTTTTACGCGAGCAGCCAAGGTGGAGAGGCTTTTTTTAAGCATCTAGATAGCTGTTTGGCTCATCCGGAATCC
CACTTAGATTTACTAGAGCTAATGTACGTATGCTTATCTTTGGGTTTTATAGGCCAGTATCGTTTAGAAAAAAATGGGCT
TGAAGCTCACCGTAGATTGAGAAAACAAGTTGTATCAGTGCTTAAGTCACATGGTCGCGGAGTACAGCAAGAGCTTAGTA
ACAAAGTAGAACAACATATATTGGCAGGTGCTCAGGTTTCGGAACGTGCTCCTCTATGGGTGGTTTGTTCGGTAACTTCC
GCACTGCTTGTTTGTATTTTTATGTACTTCAGCTACGAGTTGAACAAAGCTTCCAACCAAACTTTTGCTCAATTGGTAAA
CCTGATTCAACCAACCCCAGCAGTCAGTAATCCTATGGTTGAGTCAAAGTCAGCACCTATTGCCGAAAGAATATCTATGT
ATTTAGCAACGGAAATTGGCAAGGATCTTGTCACTGTGGAGGCGCTGCAAGATAGAGTTCGCATTTCTCTTAAAGCTCAA
GACCTATTTGAATCTGGTAGTGCGAGCGTTGTGGCTTACATACAGCCAGTTATTTCTAAAGTTGCACGCACCTTAGAAGC
GACACAAGGGAAGATCATAATTACCGGGCATACCGATGACCGTCCGATATTTACCAGCAAGTACCCATCCAATTGGCACT
TGTCTTTAGCTCGCGCAACTTCTCTTTCCGAACAGTTAATCGCCAACAGTGCACTTAAAGGCAGAGTGATTCCTGAAGGG
TTGGGTGATGCGAGACCTTTGGTAGAAAATGACAGCGAAGAGAACCGAGCAATGAATCGTCGAATTGAAATCGATCTTAT
TGTGGGCAACTAA