Detailed information of component protein


Summary

Component ID T6CP015683
Component protein type TssJ
T6SS ID (Type) T6SS01252 experimental (Type i5)
Strain Vibrio parahaemolyticus strain A3
Replicon chromosome
Sequence Protein sequence (152 a.a.); Nucleotide sequence (456 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) CGH00_RS20285
Coordinate (Strand) 69..524 (+)
NCBI ID 1693705920
RefSeq NZ_NNQJ01000119
Uniprot ID -
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS-SciN PF12790.9 5.4e-39 30..145

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-6 VKQIYK
Transmembrane helix 7-26 SFLLFIFLVLMGCSAANLVV
Outside 27-151 DPYADLEITAKHNINPDSNGRPSPVVVYVFELTSNTLFESQDFFSIYEEHEKVLGPDLVNKYEISLTPGQKEIYQASMSPKTEYLGIVAAFRDIENSNWRQVIKVDKTGYNTYQISLEDLSLVVQ



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
LIPO(Sec/SPII) 0.9810 pos: 18-19. LMG-CS. VKQIYKSFLLFIFLVLMG



  Protein sequence: 152 a.a.    

>T6CP015683 NZ_NNQJ01000119:69-524 [Vibrio parahaemolyticus] [TssJ]
VKQIYKSFLLFIFLVLMGCSAANLVVDPYADLEITAKHNINPDSNGRPSPVVVYVFELTSNTLFESQDFFSIYEEHEKVL
GPDLVNKYEISLTPGQKEIYQASMSPKTEYLGIVAAFRDIENSNWRQVIKVDKTGYNTYQISLEDLSLVVQ*

  Nucleotide sequence: 456 bp    

>T6CP015683 NZ_NNQJ01000119:69-524 [Vibrio parahaemolyticus] [TssJ]
GTGAAACAAATTTATAAATCATTTTTGCTGTTTATATTTTTAGTATTAATGGGATGCTCCGCCGCTAATTTAGTGGTCGA
CCCATATGCGGATTTAGAAATAACGGCAAAACATAATATCAACCCTGACTCGAATGGAAGACCATCACCAGTTGTTGTAT
ATGTATTTGAACTTACATCAAATACACTGTTTGAGAGCCAAGATTTTTTCTCTATTTATGAGGAGCATGAAAAAGTACTC
GGTCCAGACTTGGTGAATAAATATGAAATATCTTTGACACCAGGCCAAAAAGAAATCTACCAAGCTAGTATGTCTCCTAA
AACAGAATATTTGGGTATCGTAGCCGCGTTTCGCGATATTGAGAATTCAAATTGGCGACAAGTCATTAAAGTAGATAAGA
CGGGTTACAACACTTATCAAATCTCGTTAGAAGATCTGTCTTTGGTCGTACAATAA