Detailed information of component protein


Summary

Component ID T6CP015682
Component protein type TssD
T6SS ID (Type) T6SS01251 experimental (Type i1)
Strain Vibrio parahaemolyticus strain D4
Replicon chromosome
Sequence Protein sequence (173 a.a.); Nucleotide sequence (519 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) CGI87_RS23505
Coordinate (Strand) 20436..20954 (-)
NCBI ID 491623110
RefSeq NZ_NNJE01000075
Uniprot ID Q79YY3_VIBPA, Q938W4_VIBPH
KEGG ID vpa:VP1393
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 3.3e-30 6..155

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-172 MPTPAYMSINGETQGHITKDTYSADSVGNTWQEAHVDEFLVQELDHVLTVPRDPQSGQPTGQRVHRPLVVTKVQDRSSPLLFNALVSGEKLPECLIRFYRTSVQGKQEHYYSIKLIDALLVDIQTRMNHCQDAATADRVTEEVLKFTYRAIEVTHENCGTAGNDDWRAPREA



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9658 - -



  Protein sequence: 173 a.a.    

>T6CP015682 NZ_NNJE01000075:c20954-20436 [Vibrio parahaemolyticus] [TssD]
MPTPAYMSINGETQGHITKDTYSADSVGNTWQEAHVDEFLVQELDHVLTVPRDPQSGQPTGQRVHRPLVVTKVQDRSSPL
LFNALVSGEKLPECLIRFYRTSVQGKQEHYYSIKLIDALLVDIQTRMNHCQDAATADRVTEEVLKFTYRAIEVTHENCGT
AGNDDWRAPREA*

  Nucleotide sequence: 519 bp    

>T6CP015682 NZ_NNJE01000075:c20954-20436 [Vibrio parahaemolyticus] [TssD]
ATGCCAACTCCAGCATATATGTCTATCAACGGTGAAACTCAAGGTCACATTACTAAAGATACATACTCTGCAGATTCAGT
AGGTAACACATGGCAAGAAGCTCACGTTGATGAGTTCCTAGTACAAGAACTTGATCACGTGCTAACTGTTCCACGTGATC
CACAAAGTGGTCAACCTACTGGTCAACGTGTACACCGTCCACTTGTTGTGACTAAAGTTCAAGACCGTTCTTCTCCACTA
CTATTTAACGCATTAGTGTCTGGTGAAAAACTTCCTGAGTGTTTGATTCGTTTCTACCGTACTTCAGTTCAAGGCAAGCA
AGAGCACTACTACTCAATCAAGCTGATTGATGCGCTATTGGTAGATATCCAAACTCGTATGAACCACTGTCAAGATGCAG
CAACAGCTGATCGCGTTACAGAAGAAGTTCTTAAGTTTACTTACCGTGCAATCGAAGTAACTCACGAAAACTGTGGTACA
GCTGGTAACGACGACTGGCGTGCTCCACGCGAAGCATAA