Detailed information of component protein


Summary

Component ID T6CP015681
Component protein type TssI
T6SS ID (Type) T6SS01251 experimental (Type i1)
Strain Vibrio parahaemolyticus strain D4
Replicon chromosome
Sequence Protein sequence (693 a.a.); Nucleotide sequence (2079 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) CGI87_RS23500
Coordinate (Strand) 18285..20363 (-)
NCBI ID 527097416
RefSeq NZ_NNJE01000075
Uniprot ID UPI000358FF6C
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 2.3e-77 26..331
Phage_base_V PF04717.14 8.8e-15 387..455
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-692 MVNDVEFKFEVPGCGHEFRVESFQVNEELSKPFHISLSLLSLDPDISFDSLIRKAGTLTLYGQGLSAARIFNGVVNEVRYLGTGRRFSRYQLVLVPQAWFLSQRQDCRIFQQKSAKDIITEVLDDGSVTDYRFELSGIYPPKEYALQYRESDLHFVQRMMAEHGMWYYFDHTDSNHTMVIVDSNDAIAPLVSSPLNASYIGPIVYHADSGGVADREHISDLELVNRVRTGQVTYTDYNYEQPKIPQEMTHAGDLDQDLKQFDYPGRYVDPVMGQVRTTEWMSEHIVDNQQVEASSDVMRLASGYSFNISDHPRSEINRDYIMLSVMHTGQDPQVHEDEASGMPTTYYNQFTCIPRDVVFKAPRLAAPVVDGPQTAVVVGPAGEEIYTDKLGRIKVQFHWDRYGNNDEHASCWIRVSQSMAAPTWGAVYLPRIGHEVVVTFLEGDPDRPLVTGAVYNGLHFPPYSLPENKTRTTFRTQTHKGTGYNELSFEDEANQEEVYIHAQKDMSTKVLNNRYRDIGQDEFLKVARHQTNEVHGDHKETIDGHKTTQVNSTFTETVEQDVTVTYNANETQYVKNNSDLEIGDNRTTKIGKNDDLDVGENSNLTVGASKSSDIGADDNQTVGGNLTVSVKGNTSYKADGATQIISGDKIVLKTGGSSLVMNSDGSIKLSGSSITIEGSDKVVVKGGNVAIN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9826 - -


  Protein sequence: 693 a.a.    

>T6CP015681 NZ_NNJE01000075:c20363-18285 [Vibrio parahaemolyticus] [TssI]
MVNDVEFKFEVPGCGHEFRVESFQVNEELSKPFHISLSLLSLDPDISFDSLIRKAGTLTLYGQGLSAARIFNGVVNEVRY
LGTGRRFSRYQLVLVPQAWFLSQRQDCRIFQQKSAKDIITEVLDDGSVTDYRFELSGIYPPKEYALQYRESDLHFVQRMM
AEHGMWYYFDHTDSNHTMVIVDSNDAIAPLVSSPLNASYIGPIVYHADSGGVADREHISDLELVNRVRTGQVTYTDYNYE
QPKIPQEMTHAGDLDQDLKQFDYPGRYVDPVMGQVRTTEWMSEHIVDNQQVEASSDVMRLASGYSFNISDHPRSEINRDY
IMLSVMHTGQDPQVHEDEASGMPTTYYNQFTCIPRDVVFKAPRLAAPVVDGPQTAVVVGPAGEEIYTDKLGRIKVQFHWD
RYGNNDEHASCWIRVSQSMAAPTWGAVYLPRIGHEVVVTFLEGDPDRPLVTGAVYNGLHFPPYSLPENKTRTTFRTQTHK
GTGYNELSFEDEANQEEVYIHAQKDMSTKVLNNRYRDIGQDEFLKVARHQTNEVHGDHKETIDGHKTTQVNSTFTETVEQ
DVTVTYNANETQYVKNNSDLEIGDNRTTKIGKNDDLDVGENSNLTVGASKSSDIGADDNQTVGGNLTVSVKGNTSYKADG
ATQIISGDKIVLKTGGSSLVMNSDGSIKLSGSSITIEGSDKVVVKGGNVAIN*

  Nucleotide sequence: 2079 bp    

>T6CP015681 NZ_NNJE01000075:c20363-18285 [Vibrio parahaemolyticus] [TssI]
ATGGTGAATGACGTAGAATTTAAATTTGAAGTGCCAGGGTGTGGGCACGAGTTTCGAGTAGAAAGCTTTCAAGTAAATGA
AGAGCTTTCGAAACCTTTTCACATCAGTCTCTCATTACTTTCACTTGATCCAGATATCTCTTTTGATTCGTTAATACGAA
AAGCAGGTACACTGACTCTTTATGGACAAGGCTTAAGCGCGGCACGCATATTCAATGGTGTGGTGAACGAAGTTCGTTAT
TTGGGTACAGGCCGTCGCTTCTCTCGCTATCAGTTAGTTTTGGTTCCGCAAGCTTGGTTCTTATCACAACGTCAAGACTG
TCGTATTTTCCAACAAAAATCAGCGAAAGATATAATTACAGAGGTGCTTGATGATGGTTCAGTGACCGACTATCGTTTTG
AATTATCTGGTATTTATCCACCAAAAGAGTACGCGCTGCAATACCGTGAGTCAGACCTACACTTTGTTCAGCGTATGATG
GCAGAACACGGTATGTGGTACTATTTCGACCACACCGATTCAAACCACACAATGGTCATTGTCGATAGTAACGATGCCAT
TGCTCCACTGGTTAGCTCTCCTCTCAATGCATCTTATATTGGGCCGATTGTATATCACGCCGATAGTGGGGGTGTTGCTG
ATCGTGAGCATATCTCCGATCTCGAGTTAGTTAACCGTGTGAGAACGGGTCAGGTTACTTACACTGACTACAATTACGAG
CAGCCAAAGATCCCGCAAGAGATGACTCACGCAGGCGATCTGGACCAAGATTTAAAGCAGTTTGATTATCCTGGACGTTA
TGTTGACCCTGTAATGGGGCAGGTGAGAACCACTGAGTGGATGTCTGAGCACATTGTCGATAATCAGCAAGTAGAAGCGA
GCAGTGATGTGATGCGTTTGGCGTCTGGTTACAGTTTTAACATCAGTGACCATCCTCGCTCTGAAATCAACCGTGATTAC
ATCATGTTATCCGTCATGCACACAGGGCAAGACCCACAAGTGCACGAAGACGAAGCGAGTGGCATGCCAACTACTTACTA
CAACCAGTTCACGTGTATTCCACGTGATGTTGTATTCAAAGCGCCCAGGTTGGCGGCTCCAGTAGTGGATGGTCCGCAAA
CTGCGGTTGTAGTTGGTCCTGCAGGGGAGGAGATCTACACCGATAAACTAGGACGAATTAAGGTTCAGTTCCATTGGGAT
CGCTATGGTAACAACGATGAACATGCAAGTTGCTGGATTCGTGTGAGTCAATCAATGGCTGCTCCAACGTGGGGCGCGGT
TTACTTGCCACGTATTGGCCATGAAGTCGTAGTGACCTTCCTTGAAGGCGACCCAGATCGCCCATTGGTGACTGGCGCAG
TTTATAATGGTCTTCACTTCCCTCCGTACTCGTTGCCTGAGAACAAAACTCGTACTACGTTCCGTACGCAAACGCACAAA
GGCACCGGCTACAACGAACTGAGTTTTGAAGACGAAGCGAACCAAGAAGAAGTCTACATTCATGCTCAAAAAGATATGTC
GACCAAAGTTCTCAACAATCGTTACCGAGATATCGGTCAGGATGAGTTCTTAAAGGTTGCGCGTCATCAGACGAACGAAG
TCCATGGTGATCATAAAGAAACCATTGATGGCCACAAAACAACCCAAGTAAACAGCACTTTTACCGAGACAGTAGAGCAA
GACGTTACCGTTACATACAACGCCAACGAAACCCAATATGTGAAGAACAATTCTGATTTGGAAATTGGTGATAACCGCAC
AACCAAGATCGGCAAGAACGATGATTTGGATGTGGGTGAAAACAGCAACTTAACTGTTGGTGCATCAAAAAGCTCGGACA
TTGGTGCCGATGATAACCAAACAGTGGGTGGCAACTTAACCGTATCGGTAAAAGGCAATACATCTTACAAAGCCGATGGC
GCGACACAGATCATCAGTGGTGACAAGATTGTACTGAAAACAGGCGGTTCTTCTTTAGTGATGAACAGTGATGGTTCAAT
CAAGCTCTCAGGGTCTTCAATCACCATTGAAGGCAGTGATAAAGTCGTCGTGAAAGGTGGTAACGTAGCGATTAACTAA