Detailed information of component protein


Summary

Component ID T6CP015680
Component protein type TssA
T6SS ID (Type) T6SS01251 experimental (Type i1)
Strain Vibrio parahaemolyticus strain D4
Replicon chromosome
Sequence Protein sequence (525 a.a.); Nucleotide sequence (1575 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) CGI87_RS23470
Coordinate (Strand) 10681..12255 (-)
NCBI ID 527097410
RefSeq NZ_NNJE01000075
Uniprot ID UPI00035911B2
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 1e-72 247..497
ImpA_N PF06812.14 2e-26 10..120
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-524 MSVIEIERLLAPISDVNPVGEDARYEFCYEMMESEVKKFGSLFGETVDWSVVKTHAIEVLEHHSKDLKAICYLVRALTEEFGLQGFEQGLKLLSEALNRFGVELYPSRKRGRDGAVEWLNHQFKLVSSRFAESAQSWDLVSGCISIIEEVQRQYDDIYQDSEADFFEIRSQLNVLSQQATVDDQSDGAMATIEQTAPLTASQPVAVETPAQSEVQTVVEKALPSAPKPAPVKKTVTKEVDVDTDFSSPTASKRTLKKVAEVMIHANPSEPLAYRIYRHLTWDDIDGLPDHQSNETPLSLAVSSDQQAEYRDKASQESDIDTVKRLERTLTDAPFWLTGHYFVYSMLNNLGFNDAALAVKQEVKRFVDSLEGIELLTFKNSIPFADEATLSWLSTQAATSSSAQSVVQTIVITDEDSLPMEDITLANLGEYAAELAHKLELDFSGRGQFMLHLQLIAAYQSVGLYPLCLPYLEKAWEVQQAFNLASWEPHLSSQLEDLIRKTLHQLFRNKDLLPEKYEKWKAIYD


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9967 - -


  Protein sequence: 525 a.a.    

>T6CP015680 NZ_NNJE01000075:c12255-10681 [Vibrio parahaemolyticus] [TssA]
MSVIEIERLLAPISDVNPVGEDARYEFCYEMMESEVKKFGSLFGETVDWSVVKTHAIEVLEHHSKDLKAICYLVRALTEE
FGLQGFEQGLKLLSEALNRFGVELYPSRKRGRDGAVEWLNHQFKLVSSRFAESAQSWDLVSGCISIIEEVQRQYDDIYQD
SEADFFEIRSQLNVLSQQATVDDQSDGAMATIEQTAPLTASQPVAVETPAQSEVQTVVEKALPSAPKPAPVKKTVTKEVD
VDTDFSSPTASKRTLKKVAEVMIHANPSEPLAYRIYRHLTWDDIDGLPDHQSNETPLSLAVSSDQQAEYRDKASQESDID
TVKRLERTLTDAPFWLTGHYFVYSMLNNLGFNDAALAVKQEVKRFVDSLEGIELLTFKNSIPFADEATLSWLSTQAATSS
SAQSVVQTIVITDEDSLPMEDITLANLGEYAAELAHKLELDFSGRGQFMLHLQLIAAYQSVGLYPLCLPYLEKAWEVQQA
FNLASWEPHLSSQLEDLIRKTLHQLFRNKDLLPEKYEKWKAIYD*

  Nucleotide sequence: 1575 bp    

>T6CP015680 NZ_NNJE01000075:c12255-10681 [Vibrio parahaemolyticus] [TssA]
ATGTCTGTGATCGAAATTGAACGTTTACTTGCGCCTATCTCTGACGTAAATCCTGTCGGTGAAGATGCTCGTTACGAATT
TTGTTATGAAATGATGGAATCCGAAGTGAAGAAGTTCGGATCCTTGTTTGGCGAAACGGTAGATTGGAGTGTCGTAAAAA
CGCACGCCATTGAAGTTCTTGAACACCACAGCAAAGATTTAAAAGCAATTTGTTACCTTGTTCGCGCGCTTACAGAAGAA
TTTGGTCTGCAAGGTTTCGAGCAAGGTCTAAAGCTGCTTAGTGAAGCGTTAAATCGTTTTGGCGTTGAGCTGTACCCGTC
GCGAAAACGGGGTAGAGATGGTGCGGTAGAGTGGTTGAACCATCAGTTTAAATTGGTGAGCAGCAGGTTTGCAGAAAGCG
CCCAATCATGGGATTTGGTTTCAGGTTGTATTTCGATTATCGAAGAAGTCCAACGTCAGTACGACGATATTTACCAAGAC
TCCGAAGCGGACTTCTTTGAAATTCGTAGTCAACTCAATGTGCTATCTCAACAAGCGACTGTCGATGACCAAAGCGATGG
TGCAATGGCTACCATCGAACAAACAGCTCCGCTAACGGCTTCACAGCCTGTAGCAGTAGAAACTCCGGCACAAAGTGAAG
TTCAAACCGTTGTAGAAAAAGCGCTTCCGTCGGCTCCTAAACCTGCACCAGTTAAGAAAACAGTAACAAAAGAAGTCGAT
GTCGATACGGATTTTTCATCGCCGACCGCTTCTAAACGTACACTTAAGAAAGTTGCGGAAGTTATGATTCATGCGAATCC
AAGTGAGCCGCTAGCTTACCGAATTTATCGTCACCTAACTTGGGATGATATTGATGGTCTTCCTGATCATCAAAGCAATG
AAACGCCATTGAGTTTGGCTGTGTCGTCTGATCAGCAGGCTGAGTACCGCGATAAAGCCTCTCAAGAAAGCGACATTGAT
ACAGTTAAGCGTTTGGAGCGCACGTTAACCGATGCTCCGTTTTGGCTGACGGGTCACTACTTTGTTTATTCGATGTTAAA
CAACCTAGGCTTTAATGACGCAGCGCTCGCTGTGAAGCAAGAAGTGAAGCGTTTTGTTGATTCATTAGAGGGCATTGAAC
TCCTCACATTTAAGAATTCTATACCATTTGCAGATGAAGCAACGTTGAGCTGGTTATCGACTCAAGCTGCAACTTCTTCA
AGTGCTCAATCTGTCGTTCAAACGATTGTCATCACAGATGAAGACTCACTGCCAATGGAAGATATCACCCTAGCCAACTT
AGGGGAGTATGCCGCAGAACTCGCACACAAACTCGAACTGGATTTCTCGGGACGTGGGCAGTTTATGCTGCATTTACAAT
TGATAGCAGCTTACCAGTCTGTTGGATTATACCCGTTGTGTTTGCCTTACCTTGAAAAAGCTTGGGAAGTGCAACAAGCG
TTTAATCTCGCGAGCTGGGAACCCCACTTATCGTCACAGCTAGAAGACCTGATTCGAAAAACACTGCATCAGTTATTCAG
AAACAAGGATCTTTTGCCTGAGAAGTACGAAAAGTGGAAAGCAATTTATGACTAA