SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP015677
Component protein type	TssE
T6SS ID (Type)	T6SS01251 (Type i1)
Strain	Vibrio parahaemolyticus strain D4
Replicon	chromosome
Sequence	Protein sequence (137 a.a.); Nucleotide sequence (411 bp)
Reference	[1] Li P, Kinch LN, Ray A, et al. Acute Hepatopancreatic Necrosis Disease-Causing Vibrio parahaemolyticus Strains Maintain an Antibacterial Type VI Secretion System with Versatile Effector Repertoires. Appl Environ Microbiol. 2017 Jun 16;83(13). pii: e00737-17. doi: 10.1128/AEM.00737-17. Print 2017 Jul 1. PMID: 28432099

Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene)	CGI87_RS23455
Coordinate (Strand)	8192..8602 (-)
NCBI ID	491623044
RefSeq	NZ_NNJE01000075
Uniprot ID	A0A072J844_VIBPH
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
GPW_gp25	PF04965.16	1.5e-17	29..115

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-136	MEKGYRLLERIELGEPKNCYEKVVSHKHLIESIHLHLADLLNTHSGNAMIDSEYGLPDFNDVLSNNTNLVRHIQKNITATIERFEPRLLNVEVHYREDHHNPLQLGFGIRGEVSHNGGKVPMSIDVYMGTDGQFNV

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9954	-	-

Protein sequence: 137 a.a.

						>T6CP015677 NZ_NNJE01000075:c8602-8192 [Vibrio parahaemolyticus] [TssE]
MEKGYRLLERIELGEPKNCYEKVVSHKHLIESIHLHLADLLNTHSGNAMIDSEYGLPDFNDVLSNNTNLVRHIQKNITAT
IERFEPRLLNVEVHYREDHHNPLQLGFGIRGEVSHNGGKVPMSIDVYMGTDGQFNV*					

Nucleotide sequence: 411 bp

						>T6CP015677 NZ_NNJE01000075:c8602-8192 [Vibrio parahaemolyticus] [TssE]
ATGGAAAAAGGTTATCGTCTTTTAGAGCGGATTGAACTGGGTGAGCCCAAAAACTGCTACGAGAAAGTGGTCTCCCACAA
GCACTTGATTGAATCTATTCATTTGCATCTTGCAGATTTGCTGAATACGCATTCTGGTAATGCGATGATCGATAGTGAAT
ACGGTTTGCCCGATTTTAATGACGTTCTGTCTAATAATACGAATCTCGTTCGCCACATCCAAAAGAACATCACAGCGACC
ATAGAGCGCTTTGAACCTCGGCTACTTAACGTCGAAGTTCACTATCGTGAAGACCACCACAATCCATTACAGCTCGGTTT
TGGTATTCGCGGAGAAGTTTCCCATAACGGCGGTAAAGTTCCAATGTCGATCGATGTCTACATGGGAACCGACGGCCAAT
TCAACGTTTAG					