Detailed information of component protein


Summary

Component ID T6CP015674
Component protein type TssM
T6SS ID (Type) T6SS01251 experimental (Type i1)
Strain Vibrio parahaemolyticus strain D4
Replicon chromosome
Sequence Protein sequence (1130 a.a.); Nucleotide sequence (3390 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) CGI87_RS23435
Coordinate (Strand) 1500..4889 (+)
NCBI ID 527097408
RefSeq NZ_NNJE01000075
Uniprot ID UPI00035909C3
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 1.7e-54 154..408
IcmF-related PF06761.14 4.2e-42 496..755
IcmF_C PF06744.14 6.7e-19 1004..1107
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-11 MFKQKILRNPV
Transmembrane helix 12-34 VVSTIVALVLAAIFAAVYLFILE
Outside 35-38 DADK
Transmembrane helix 39-61 LYLWVGLGVITGFYFTFQLSLWL
Inside 62-401 KKKNSSKVQRLETEEEALSMVIRPLLSNAGKKPIYLMVGNKGAGRRQFLFNSSAIKPMDRSRTAKNDFFEWYESDGAVYVKPDQRLIFQEVSSSDASLWNTFIDEVIRHRPRKPFSGCLFFVDFEFMIVSEPEQKDYTMTALLQRLNSITEKTSSALPVYLMMTKLDKLDGFKEYVHSSSLKTRIEFLSIPLKEAKGVLTEYYLDSFHNLVKVLESNALDASANSTDISEKQAILAFPKQFELCQREISYVLERLCDTNNGVYSLDIREIFFCSSLQGGRKYNLLAKSCSNYFNLPIIASEHTQLTETPYFSRFLLDSQILPESDFAGENKTYLRMIQRQ
Transmembrane helix 402-424 SHLAMLASVVLLAGGTYFFVTTL
Outside 425-1129 DSNLRVINQLLNIDEKVQTEQEASFNQLLQSATRAIQPSYNAWLEGSRALDEEIIPLNISRLNESTKLAYEALIKEVAQQLMPVIERGYRFELTHNQHDVTATLPLLKGYLMLKDPTKRDIQFLRRQTLQTLTDLSDKPDVVNQAMRYLDAYFRTQFSPVDINMDVVRATRRSLLANSNVDLVYAGILNQADAIDLGTLDLQRAVGFEFNNVFNEPLDDNRLVIDKIYTSTGFSTFYRPRVDLMSKQVISDNWVLGLSSYVIPTKEEQESFKNQVRKKYTDDYINYWRNALSELKIQSYSNVGDLTNAIDLISGPSSPMTTVLKQVYANTQFSPVGEKNVLISKVDPKLAEVANSASEAVEEVVQPDYLLMKRVEQAFHLLNQLQVSETPNSPTPWDETIAALSRVRTYMKDIADAPDPQMAALAAAQHRMSSSEADPLIKLKQIAQKSPEPVRSWLLDVVKQSWSVMITESAKGIQTQWYSEIYTKFKEIGLDKYPFDLTATEEISIEDFELLFASGGLLDTFIQKNFAPFYDTNLWVPKQVDGETMPLSSALLVQLRNYNVIRDTLINKSTNRVYIPFSAKVLDLDSSAIRASLKISDTDINYYHGPSRIREMEWPPQNGDFNISITIQDVTDEGKQHVLNKSGQWAIYRLLGDSTLTNTHNGSFVSDIKVSGRDLSLRITPLTQKNPFTLAELYNFTLPESI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9980 - -


  Protein sequence: 1130 a.a.    

>T6CP015674 NZ_NNJE01000075:1500-4889 [Vibrio parahaemolyticus] [TssM]
MFKQKILRNPVVVSTIVALVLAAIFAAVYLFILEDADKLYLWVGLGVITGFYFTFQLSLWLKKKNSSKVQRLETEEEALS
MVIRPLLSNAGKKPIYLMVGNKGAGRRQFLFNSSAIKPMDRSRTAKNDFFEWYESDGAVYVKPDQRLIFQEVSSSDASLW
NTFIDEVIRHRPRKPFSGCLFFVDFEFMIVSEPEQKDYTMTALLQRLNSITEKTSSALPVYLMMTKLDKLDGFKEYVHSS
SLKTRIEFLSIPLKEAKGVLTEYYLDSFHNLVKVLESNALDASANSTDISEKQAILAFPKQFELCQREISYVLERLCDTN
NGVYSLDIREIFFCSSLQGGRKYNLLAKSCSNYFNLPIIASEHTQLTETPYFSRFLLDSQILPESDFAGENKTYLRMIQR
QSHLAMLASVVLLAGGTYFFVTTLDSNLRVINQLLNIDEKVQTEQEASFNQLLQSATRAIQPSYNAWLEGSRALDEEIIP
LNISRLNESTKLAYEALIKEVAQQLMPVIERGYRFELTHNQHDVTATLPLLKGYLMLKDPTKRDIQFLRRQTLQTLTDLS
DKPDVVNQAMRYLDAYFRTQFSPVDINMDVVRATRRSLLANSNVDLVYAGILNQADAIDLGTLDLQRAVGFEFNNVFNEP
LDDNRLVIDKIYTSTGFSTFYRPRVDLMSKQVISDNWVLGLSSYVIPTKEEQESFKNQVRKKYTDDYINYWRNALSELKI
QSYSNVGDLTNAIDLISGPSSPMTTVLKQVYANTQFSPVGEKNVLISKVDPKLAEVANSASEAVEEVVQPDYLLMKRVEQ
AFHLLNQLQVSETPNSPTPWDETIAALSRVRTYMKDIADAPDPQMAALAAAQHRMSSSEADPLIKLKQIAQKSPEPVRSW
LLDVVKQSWSVMITESAKGIQTQWYSEIYTKFKEIGLDKYPFDLTATEEISIEDFELLFASGGLLDTFIQKNFAPFYDTN
LWVPKQVDGETMPLSSALLVQLRNYNVIRDTLINKSTNRVYIPFSAKVLDLDSSAIRASLKISDTDINYYHGPSRIREME
WPPQNGDFNISITIQDVTDEGKQHVLNKSGQWAIYRLLGDSTLTNTHNGSFVSDIKVSGRDLSLRITPLTQKNPFTLAEL
YNFTLPESI*

  Nucleotide sequence: 3390 bp    

>T6CP015674 NZ_NNJE01000075:1500-4889 [Vibrio parahaemolyticus] [TssM]
ATGTTCAAACAAAAAATACTAAGAAATCCAGTCGTGGTTTCTACCATAGTGGCTTTGGTATTAGCCGCGATATTTGCAGC
GGTATATTTATTCATACTTGAAGACGCAGATAAGCTTTATCTATGGGTTGGTTTAGGAGTTATTACTGGTTTTTATTTTA
CATTCCAGCTTTCCCTATGGCTTAAGAAAAAAAACAGCTCAAAAGTTCAACGTTTAGAGACGGAAGAAGAAGCTCTTTCA
ATGGTGATCCGCCCTCTTCTTTCTAATGCGGGCAAAAAGCCAATCTATCTGATGGTTGGTAATAAAGGGGCCGGTCGACG
TCAGTTTTTGTTTAATTCCAGCGCAATTAAGCCGATGGACCGTTCTCGCACAGCAAAAAACGATTTCTTCGAATGGTATG
AATCTGATGGTGCCGTTTATGTTAAGCCAGATCAACGCCTCATCTTCCAGGAAGTTTCAAGCAGTGATGCTTCTCTCTGG
AATACTTTTATTGATGAGGTGATTCGTCATCGTCCGAGAAAACCGTTTTCAGGTTGCTTATTCTTTGTTGATTTCGAATT
TATGATTGTATCTGAGCCAGAGCAGAAAGATTACACCATGACAGCGCTATTGCAGCGTTTGAACTCTATCACTGAGAAAA
CTTCGTCTGCACTACCTGTTTATTTGATGATGACGAAACTCGACAAACTAGATGGCTTTAAAGAATACGTTCACTCTAGT
TCACTAAAAACACGTATTGAATTTCTGTCCATTCCATTGAAGGAAGCGAAAGGTGTACTTACCGAATACTACCTAGATAG
CTTCCATAATCTGGTAAAAGTGCTAGAAAGCAACGCTTTAGACGCATCGGCAAACTCAACAGATATCAGCGAAAAGCAAG
CCATCCTTGCCTTCCCAAAACAGTTTGAACTCTGTCAACGTGAAATCAGCTACGTGCTTGAACGTCTTTGCGATACAAAC
AATGGCGTTTACTCGTTGGATATTCGCGAAATCTTCTTCTGTTCTTCTTTGCAAGGTGGACGCAAGTACAACTTGTTAGC
CAAAAGCTGCAGTAATTACTTCAATTTACCAATTATCGCATCTGAGCACACGCAACTAACTGAAACACCGTACTTTTCTC
GCTTCTTGCTTGATTCTCAAATCCTCCCAGAGAGTGACTTCGCAGGCGAGAACAAGACTTACCTACGCATGATTCAGCGT
CAAAGCCATTTGGCAATGCTGGCATCCGTTGTCTTATTGGCAGGCGGTACTTATTTTTTTGTCACAACACTAGACAGTAA
CTTGCGTGTTATTAACCAATTGCTAAATATCGACGAAAAAGTTCAAACAGAACAAGAAGCAAGCTTCAACCAGTTATTGC
AGAGTGCTACTCGTGCAATCCAACCCTCATACAATGCTTGGTTAGAAGGATCACGAGCATTAGATGAAGAAATAATACCG
CTAAATATAAGCAGGTTAAATGAAAGTACAAAATTAGCTTATGAAGCATTGATTAAAGAGGTTGCTCAACAACTTATGCC
TGTTATTGAGCGAGGCTACCGTTTTGAACTGACACACAACCAACATGATGTCACAGCAACGTTGCCGTTACTAAAAGGCT
ACTTGATGTTGAAGGATCCGACCAAGCGAGATATTCAGTTTTTACGACGCCAAACATTGCAAACACTGACAGACTTGAGC
GATAAGCCGGATGTGGTAAATCAAGCTATGCGATACTTGGACGCCTACTTCCGCACTCAATTCTCACCTGTAGATATCAA
CATGGATGTCGTTCGAGCAACTCGTCGCTCATTGTTGGCAAATTCAAATGTGGATCTTGTTTACGCAGGCATTTTAAACC
AAGCAGATGCTATCGATCTTGGCACACTCGATCTACAACGTGCAGTTGGCTTTGAATTTAACAACGTGTTTAACGAGCCG
TTAGATGACAACCGACTAGTAATCGATAAGATTTATACCTCCACTGGCTTTAGTACCTTCTATCGCCCTCGCGTCGACTT
GATGTCTAAACAAGTGATCAGTGATAACTGGGTGCTAGGATTGTCCAGCTATGTTATCCCAACCAAAGAAGAACAAGAAT
CGTTTAAAAATCAAGTACGTAAAAAGTACACCGATGATTATATCAACTACTGGCGCAACGCTCTCAGTGAGTTAAAAATT
CAGAGTTATAGCAATGTGGGTGATCTAACAAATGCTATCGACCTAATCTCTGGACCATCTTCACCAATGACGACTGTATT
AAAGCAGGTCTATGCAAATACTCAGTTTTCACCGGTAGGAGAAAAAAACGTACTCATATCGAAAGTAGACCCAAAACTGG
CAGAAGTGGCGAACTCTGCGTCAGAAGCGGTTGAAGAAGTGGTTCAGCCGGATTACTTGTTGATGAAGCGTGTAGAACAA
GCGTTCCATCTTCTAAATCAGCTTCAAGTAAGCGAGACTCCTAACTCCCCTACTCCATGGGACGAAACTATCGCAGCTTT
AAGCCGAGTTCGCACCTACATGAAAGATATTGCGGATGCTCCCGATCCACAAATGGCAGCACTTGCAGCCGCTCAACACC
GAATGAGCAGCTCTGAAGCCGATCCGCTAATTAAACTTAAACAGATTGCTCAGAAGTCACCAGAGCCAGTACGCAGTTGG
TTACTTGATGTCGTAAAGCAAAGCTGGTCGGTAATGATCACCGAATCAGCAAAAGGCATTCAAACCCAATGGTATAGTGA
AATTTACACCAAATTTAAAGAGATAGGACTTGATAAATACCCATTTGATCTCACAGCAACAGAGGAGATTTCTATCGAAG
ACTTCGAACTGTTGTTTGCTTCAGGTGGATTGTTAGACACATTTATTCAGAAAAACTTCGCACCGTTCTACGATACCAAC
TTGTGGGTACCAAAACAGGTGGATGGTGAAACAATGCCATTATCTTCAGCCTTACTGGTGCAATTGCGCAATTACAACGT
TATCCGCGACACGCTGATCAATAAGAGTACTAACCGAGTTTATATTCCATTCAGTGCGAAAGTATTAGATCTTGACTCAA
GTGCTATCAGAGCCAGTTTGAAAATTTCTGACACTGATATCAACTACTATCACGGTCCGAGCCGAATTCGTGAAATGGAG
TGGCCACCGCAAAACGGCGACTTCAACATTAGTATCACGATCCAAGATGTGACAGACGAAGGTAAACAACACGTTTTAAA
TAAGAGTGGTCAATGGGCGATATATAGATTGCTAGGTGATTCGACCCTGACAAACACTCATAACGGTAGCTTCGTTAGTG
ACATAAAAGTATCAGGGAGGGATTTGAGCCTCCGTATAACTCCCTTGACACAAAAAAACCCTTTCACTTTGGCTGAGTTG
TACAACTTTACGCTCCCAGAGTCGATTTGA