Detailed information of component protein


Summary

Component ID T6CP015673
Component protein type TagH
T6SS ID (Type) T6SS01250 experimental (Type i5)
Strain Vibrio parahaemolyticus strain D4
Replicon chromosome
Sequence Protein sequence (399 a.a.); Nucleotide sequence (1197 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) CGI87_RS17220
Coordinate (Strand) 19453..20649 (-)
NCBI ID 491606233
RefSeq NZ_NNJE01000049
Uniprot ID Q87HC2_VIBPA, A0A0L8RYZ1_VIBPH
KEGG ID vpa:VPA1043
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
FHA PF00498.28 1.2e-14 32..101

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-398 MKLVLTITSFHKFTPEIESEFVFESSDEHAKVTFGRSEQCDWTLPDPERVISGTHGELIKFGDKYLIKDLSTNGTFVNNAVTPIGQGNELALSHGDTVALGDYQIQISISDISEDRTEHQFTSNPEVKTPVGFEQHVESIPEMEDFGLSAAELMDESVPSDFQLDIGLVDDFLEIPSHETEVPQPKVASMQPDTNAKSQKPTVHRGELEAFIYGMGIDPNMVPSQNREQWFEQLGQSFSLMLIGLMETLHNRAVFKQTNRVNHTAFRKSENNPLKFSANLEDAIHNLYNRQTSSFLKPNAAIKEAFNDIENHEQALMQGVAGTVSSVMSLVEPNTIYSDALAKDNVINKVIPARKYAQSWKRFEGIHSQLTDELVNKESPFYLEDFAKHYELALKNKG



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9679 - -



  Protein sequence: 399 a.a.    

>T6CP015673 NZ_NNJE01000049:c20649-19453 [Vibrio parahaemolyticus] [TagH]
MKLVLTITSFHKFTPEIESEFVFESSDEHAKVTFGRSEQCDWTLPDPERVISGTHGELIKFGDKYLIKDLSTNGTFVNNA
VTPIGQGNELALSHGDTVALGDYQIQISISDISEDRTEHQFTSNPEVKTPVGFEQHVESIPEMEDFGLSAAELMDESVPS
DFQLDIGLVDDFLEIPSHETEVPQPKVASMQPDTNAKSQKPTVHRGELEAFIYGMGIDPNMVPSQNREQWFEQLGQSFSL
MLIGLMETLHNRAVFKQTNRVNHTAFRKSENNPLKFSANLEDAIHNLYNRQTSSFLKPNAAIKEAFNDIENHEQALMQGV
AGTVSSVMSLVEPNTIYSDALAKDNVINKVIPARKYAQSWKRFEGIHSQLTDELVNKESPFYLEDFAKHYELALKNKG*

  Nucleotide sequence: 1197 bp    

>T6CP015673 NZ_NNJE01000049:c20649-19453 [Vibrio parahaemolyticus] [TagH]
ATGAAATTGGTATTGACCATAACGAGTTTCCACAAATTTACTCCGGAAATAGAGAGTGAGTTTGTGTTTGAATCAAGTGA
TGAGCATGCAAAGGTAACCTTCGGACGCTCAGAACAATGTGACTGGACGTTACCAGACCCTGAGAGAGTTATTTCTGGGA
CTCACGGCGAATTGATTAAATTTGGCGATAAATATCTAATTAAAGATTTATCAACAAATGGCACATTTGTTAATAATGCA
GTTACTCCAATCGGCCAAGGGAATGAGCTTGCTTTGTCCCATGGTGACACTGTTGCTTTAGGCGATTATCAAATACAAAT
TAGTATTAGTGATATCTCTGAAGATAGGACAGAGCATCAATTTACATCTAACCCAGAGGTTAAGACGCCAGTTGGATTCG
AACAGCACGTAGAATCGATTCCAGAGATGGAAGATTTTGGTTTAAGCGCTGCCGAGTTGATGGATGAAAGTGTCCCATCA
GATTTTCAGTTAGACATTGGTCTAGTAGATGATTTTCTAGAAATTCCGAGTCACGAAACTGAAGTGCCACAACCTAAAGT
TGCATCAATGCAGCCTGATACCAACGCTAAAAGTCAAAAACCTACAGTGCATCGAGGTGAACTGGAAGCCTTCATTTATG
GCATGGGGATCGACCCCAATATGGTACCAAGCCAAAATCGAGAGCAGTGGTTTGAACAATTAGGTCAGTCGTTTTCTCTC
ATGCTTATTGGGCTAATGGAGACTCTTCACAATCGGGCTGTATTTAAACAAACCAATCGCGTCAACCATACTGCATTTAG
AAAGTCTGAAAATAATCCACTTAAGTTTTCAGCAAATTTAGAAGATGCAATACACAATTTGTATAACCGTCAAACGTCAA
GTTTTTTAAAGCCTAATGCCGCAATAAAAGAAGCATTTAACGATATTGAAAATCATGAGCAGGCTTTAATGCAAGGAGTA
GCGGGTACGGTATCGAGTGTCATGTCTCTCGTTGAACCTAATACTATTTATTCAGATGCATTGGCTAAAGACAATGTAAT
TAACAAGGTTATTCCAGCAAGAAAATATGCTCAGAGTTGGAAGCGCTTTGAAGGTATTCATAGCCAATTAACAGATGAAC
TTGTCAATAAAGAGTCTCCATTTTATTTAGAAGATTTTGCTAAGCACTACGAATTAGCGCTCAAGAATAAAGGTTAA