Detailed information of component protein


Summary

Component ID T6CP015672
Component protein type TssJ
T6SS ID (Type) T6SS01250 experimental (Type i5)
Strain Vibrio parahaemolyticus strain D4
Replicon chromosome
Sequence Protein sequence (152 a.a.); Nucleotide sequence (456 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) CGI87_RS17215
Coordinate (Strand) 18988..19443 (-)
NCBI ID 491606235
RefSeq NZ_NNJE01000049
Uniprot ID Q87HC3_VIBPA, A0A2R9VI00_VIBPH
KEGG ID vpa:VPA1042
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS-SciN PF12790.9 5.7e-39 30..145

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-6 VKQIYK
Transmembrane helix 7-26 SFLLFIFLVLMGCSAANLVV
Outside 27-151 DPYADLEITANHNINPDSNGRPSPVVVYVFELTSNTLFESQDFFSIYEEHEKVLGPDLVNKYEISLTPGQKEIYQASMSPKTEYLGIVAAFRDIENSNWRQVIKVDKTGYNTYQISLEDLSLVVQ



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
LIPO(Sec/SPII) 0.9804 pos: 18-19. LMG-CS. VKQIYKSFLLFIFLVLMG



  Protein sequence: 152 a.a.    

>T6CP015672 NZ_NNJE01000049:c19443-18988 [Vibrio parahaemolyticus] [TssJ]
VKQIYKSFLLFIFLVLMGCSAANLVVDPYADLEITANHNINPDSNGRPSPVVVYVFELTSNTLFESQDFFSIYEEHEKVL
GPDLVNKYEISLTPGQKEIYQASMSPKTEYLGIVAAFRDIENSNWRQVIKVDKTGYNTYQISLEDLSLVVQ*

  Nucleotide sequence: 456 bp    

>T6CP015672 NZ_NNJE01000049:c19443-18988 [Vibrio parahaemolyticus] [TssJ]
GTGAAACAAATTTATAAATCATTTTTGCTTTTTATATTTTTAGTATTAATGGGATGCTCCGCCGCTAATTTAGTGGTCGA
CCCATATGCGGATTTAGAAATAACGGCAAATCATAATATCAACCCTGACTCGAATGGAAGACCGTCACCAGTTGTTGTAT
ATGTATTTGAACTTACATCAAATACACTGTTTGAGAGCCAAGATTTTTTCTCTATTTATGAGGAGCATGAAAAAGTACTC
GGTCCAGACTTGGTGAATAAATATGAAATATCTTTGACACCAGGCCAAAAAGAAATCTACCAAGCTAGTATGTCTCCTAA
AACAGAATATTTGGGTATCGTAGCCGCGTTTCGCGATATTGAGAATTCAAATTGGCGACAAGTCATTAAAGTAGATAAGA
CGGGTTACAACACTTATCAAATCTCGTTAGAAGATCTGTCTTTGGTCGTACAATAA