Detailed information of component protein


Summary

Component ID T6CP015671
Component protein type TssK
T6SS ID (Type) T6SS01250 experimental (Type i5)
Strain Vibrio parahaemolyticus strain D4
Replicon chromosome
Sequence Protein sequence (442 a.a.); Nucleotide sequence (1326 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) CGI87_RS17210
Coordinate (Strand) 17641..18966 (-)
NCBI ID 491606237
RefSeq NZ_NNJE01000049
Uniprot ID Q87HC4_VIBPA
KEGG ID vpa:VPA1041
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.9e-122 19..439
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-441 MMQYSKTAWCEGMFLRPQHFQQHERAISNEYKGLHSLGGSYTWGVWNCRVKEHALKTGLIELDNLQAILPDMTLIDFSATTSFLSPLKVKKGTENTLVKVIVPLSKVSSKMIADPSETTVSRYLLQDLDVIDNLTGQDEETIQVASLNIELKSSNEQLTGYIELPILKIKEVSTEGEVILDDSYVPPLLNLLNDKVMTGYLRNAMAMTKIRADVIAQRLVKGKAASASAVDFIMLQMLNRYEAILKHFSELEKVHPLELATTFKGYIGELATFSHTTKRLPNLKAYDHLEVASVFAELNQVLSQYLSVVLDQTASKLPLEVRQYGIQVTPLPDKRLLESCQFVLAIKADTTTDEIRRLVPAQLKLGPAEQIRDLINNQINGINVAPLSVVPRQIPYQTGYVYFEVVKKGPFWMRLKDSGGIALHLSGHFPNPDIELWSINQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9893 - -


  Protein sequence: 442 a.a.    

>T6CP015671 NZ_NNJE01000049:c18966-17641 [Vibrio parahaemolyticus] [TssK]
MMQYSKTAWCEGMFLRPQHFQQHERAISNEYKGLHSLGGSYTWGVWNCRVKEHALKTGLIELDNLQAILPDMTLIDFSAT
TSFLSPLKVKKGTENTLVKVIVPLSKVSSKMIADPSETTVSRYLLQDLDVIDNLTGQDEETIQVASLNIELKSSNEQLTG
YIELPILKIKEVSTEGEVILDDSYVPPLLNLLNDKVMTGYLRNAMAMTKIRADVIAQRLVKGKAASASAVDFIMLQMLNR
YEAILKHFSELEKVHPLELATTFKGYIGELATFSHTTKRLPNLKAYDHLEVASVFAELNQVLSQYLSVVLDQTASKLPLE
VRQYGIQVTPLPDKRLLESCQFVLAIKADTTTDEIRRLVPAQLKLGPAEQIRDLINNQINGINVAPLSVVPRQIPYQTGY
VYFEVVKKGPFWMRLKDSGGIALHLSGHFPNPDIELWSINQ*

  Nucleotide sequence: 1326 bp    

>T6CP015671 NZ_NNJE01000049:c18966-17641 [Vibrio parahaemolyticus] [TssK]
ATGATGCAATACTCCAAGACGGCTTGGTGCGAGGGGATGTTTCTGCGTCCCCAGCATTTTCAACAGCACGAACGCGCAAT
ATCTAATGAATATAAAGGCTTACACAGTTTAGGTGGCTCATATACGTGGGGCGTTTGGAATTGCCGTGTAAAAGAACATG
CCTTAAAAACAGGCTTGATTGAACTTGATAATCTTCAAGCAATTCTTCCTGATATGACGCTGATAGACTTTTCAGCAACA
ACAAGTTTTCTGTCTCCTTTAAAGGTAAAAAAAGGGACGGAAAATACCTTAGTGAAGGTGATCGTTCCACTCTCAAAAGT
CAGCAGTAAAATGATCGCGGATCCAAGTGAAACAACGGTTTCTCGGTATTTACTTCAAGATCTAGACGTTATTGATAACC
TGACGGGCCAAGATGAAGAAACGATTCAAGTGGCCTCATTAAATATCGAGCTGAAATCAAGCAATGAGCAGTTAACAGGT
TATATAGAGCTACCAATCCTTAAGATTAAAGAAGTTTCTACGGAAGGAGAGGTCATTCTTGATGACTCTTACGTACCGCC
ACTTCTAAACTTGTTAAATGACAAGGTGATGACGGGGTATCTACGTAATGCAATGGCAATGACCAAGATACGCGCAGATG
TTATCGCTCAACGACTTGTTAAAGGAAAAGCGGCTTCAGCATCTGCGGTAGATTTCATAATGCTGCAAATGTTGAATCGA
TATGAAGCCATATTGAAGCATTTTAGTGAGCTGGAGAAAGTACATCCCTTAGAGCTTGCGACAACCTTTAAAGGCTATAT
AGGCGAGTTGGCAACGTTTTCTCACACCACCAAGCGCTTACCTAATCTCAAAGCTTACGATCACCTTGAAGTTGCAAGTG
TGTTTGCTGAACTTAATCAAGTCCTTAGTCAGTACTTGAGTGTCGTTCTTGATCAGACTGCAAGTAAGTTGCCACTAGAA
GTACGCCAGTACGGTATTCAAGTGACACCACTTCCAGATAAGCGACTATTGGAATCATGTCAGTTTGTATTGGCGATTAA
AGCGGACACAACAACGGATGAGATTAGACGCTTAGTCCCTGCGCAATTGAAGCTTGGTCCGGCAGAACAGATTAGAGATC
TAATCAACAACCAGATTAATGGAATTAACGTAGCTCCTTTAAGTGTCGTGCCGCGACAGATTCCATATCAAACCGGGTAT
GTTTATTTTGAGGTCGTTAAGAAGGGGCCATTCTGGATGCGACTTAAAGACAGCGGTGGTATTGCACTGCATTTATCTGG
TCATTTCCCAAATCCGGACATAGAGCTTTGGAGCATTAATCAATAA