Detailed information of component protein


Summary

Component ID T6CP015670
Component protein type TssL
T6SS ID (Type) T6SS01250 experimental (Type i5)
Strain Vibrio parahaemolyticus strain D4
Replicon chromosome
Sequence Protein sequence (431 a.a.); Nucleotide sequence (1293 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) CGI87_RS17205
Coordinate (Strand) 16337..17629 (-)
NCBI ID 491641512
RefSeq NZ_NNJE01000049
Uniprot ID UPI000205E542
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 4.3e-55 50..252
OmpA PF00691.22 2e-13 322..420
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-229 MEQTIVKPTPGGRAAVSKAQPQRSADSTVVISKSPELVNNDSVVAYGDNPLLAEANGLLSIIGQIRATATHSDPLFLKETLAQKLRDYENRLRQHDVDLETIDTARYCLCCSLDEAVLNTNWGSQSFWTHDSLLSSFYASSQGGEAFFKHLDSCLAHPESHLDLLELMYVCLSLGFIGQYRLEKNGLEAHRKLRKQVVSVLKLHGRGVQQELSNKVEQHILAGAQVSER
Transmembrane helix 230-252 APLWVVCSVTSALLVCIFMYFSY
Inside 253-430 ELNKASNQTFAQLVNLIQPTPAVSNPMVESKSAPIAERISMYLATEIGKDLVTVEALQDRVRISLRAQDLFESGSASVVAYIQPVISKVARTLEATQGKIIITGHTDDRPIFTSKYPSNWHLSLARATSLSEQLIANSALKGRVIPEGLGDARPLVENDSEENRAMNRRIEIDLIVGN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9408 - -


  Protein sequence: 431 a.a.    

>T6CP015670 NZ_NNJE01000049:c17629-16337 [Vibrio parahaemolyticus] [TssL]
MEQTIVKPTPGGRAAVSKAQPQRSADSTVVISKSPELVNNDSVVAYGDNPLLAEANGLLSIIGQIRATATHSDPLFLKET
LAQKLRDYENRLRQHDVDLETIDTARYCLCCSLDEAVLNTNWGSQSFWTHDSLLSSFYASSQGGEAFFKHLDSCLAHPES
HLDLLELMYVCLSLGFIGQYRLEKNGLEAHRKLRKQVVSVLKLHGRGVQQELSNKVEQHILAGAQVSERAPLWVVCSVTS
ALLVCIFMYFSYELNKASNQTFAQLVNLIQPTPAVSNPMVESKSAPIAERISMYLATEIGKDLVTVEALQDRVRISLRAQ
DLFESGSASVVAYIQPVISKVARTLEATQGKIIITGHTDDRPIFTSKYPSNWHLSLARATSLSEQLIANSALKGRVIPEG
LGDARPLVENDSEENRAMNRRIEIDLIVGN*

  Nucleotide sequence: 1293 bp    

>T6CP015670 NZ_NNJE01000049:c17629-16337 [Vibrio parahaemolyticus] [TssL]
ATGGAACAGACGATAGTAAAACCTACTCCTGGCGGAAGAGCGGCTGTATCTAAAGCTCAGCCTCAAAGATCAGCAGACAG
TACTGTTGTGATATCCAAAAGCCCTGAGTTGGTTAACAACGATTCAGTTGTTGCTTATGGAGATAATCCACTATTGGCAG
AAGCTAATGGTCTACTTTCGATTATTGGACAAATCAGAGCAACAGCTACTCATTCCGATCCTTTATTTCTTAAAGAAACG
CTCGCGCAAAAACTTAGGGATTATGAGAATCGTCTGCGTCAACATGATGTTGACCTGGAAACCATTGATACCGCACGTTA
TTGTCTGTGCTGTTCTTTAGACGAAGCAGTATTGAATACCAATTGGGGGAGTCAATCGTTTTGGACACATGATTCTCTGT
TGAGCTCTTTTTACGCGAGCAGCCAAGGTGGAGAGGCTTTTTTTAAGCATCTAGATAGCTGTTTGGCTCATCCGGAATCG
CACTTAGATTTACTAGAGCTAATGTACGTATGCTTATCTTTGGGTTTTATAGGCCAGTATCGTTTAGAAAAAAATGGGCT
TGAAGCTCACCGTAAATTGAGAAAACAAGTTGTATCAGTGCTTAAGTTACATGGTCGCGGAGTACAGCAAGAGCTTAGTA
ACAAAGTAGAACAACATATATTGGCAGGTGCTCAGGTTTCGGAACGTGCACCTCTGTGGGTGGTTTGTTCGGTAACTTCC
GCACTGCTTGTTTGTATTTTTATGTACTTCAGTTACGAGTTGAACAAAGCTTCCAACCAAACTTTTGCTCAATTGGTAAA
CCTGATTCAACCAACCCCAGCGGTTAGTAATCCTATGGTTGAGTCAAAGTCAGCACCTATTGCCGAAAGAATATCTATGT
ATTTAGCAACGGAAATTGGCAAGGATCTTGTCACTGTGGAGGCGCTGCAAGATAGAGTTCGTATTTCTCTTAGAGCTCAA
GACCTATTTGAATCTGGTAGTGCGAGCGTTGTGGCTTACATACAGCCAGTTATTTCTAAAGTTGCACGTACCTTAGAAGC
GACACAAGGGAAGATCATAATTACCGGGCATACCGATGACCGTCCGATATTTACCAGCAAGTACCCATCCAATTGGCACT
TGTCTTTAGCTCGCGCAACTTCTCTTTCCGAACAGTTAATCGCCAACAGTGCACTTAAAGGTAGAGTGATTCCTGAAGGA
TTGGGTGATGCGAGACCTTTGGTAGAAAATGACAGTGAAGAGAACCGAGCAATGAATCGTCGAATTGAAATCGATCTTAT
TGTGGGCAACTAA