Detailed information of component protein


Summary

Component ID T6CP015666
Component protein type TssB
T6SS ID (Type) T6SS01250 experimental (Type i5)
Strain Vibrio parahaemolyticus strain D4
Replicon chromosome
Sequence Protein sequence (177 a.a.); Nucleotide sequence (531 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) CGI87_RS17180
Coordinate (Strand) 9663..10193 (-)
NCBI ID WP_005463809.1
RefSeq NZ_NNJE01000049
Uniprot ID S5JDR9_VIBPH, Q87HD0_VIBPA, A0A072FX85_VIBPH
KEGG ID vpa:VPA1035, vpf:M634_23095
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VipA PF05591.14 1.6e-62 9..161

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-176 MTSIHSKLSRVRKPRVHITYDVETEGTTLKKELPFVVGVMGDFAGQNTEALKPLKDRRFIQIDRDNFDDVLKKMSPSVKFKVANKLANDDSEFAVELSFKSMQDFEPAAIVNQVEPLRQLMETRNKLRDLMTKVDRSEELENILEEVLNNTDNLAKLAGELDLGKKAPSESTEGAE



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9966 - -



  Protein sequence: 177 a.a.    

>T6CP015666 NZ_NNJE01000049:c10193-9663 [Vibrio parahaemolyticus] [TssB]
MTSIHSKLSRVRKPRVHITYDVETEGTTLKKELPFVVGVMGDFAGQNTEALKPLKDRRFIQIDRDNFDDVLKKMSPSVKF
KVANKLANDDSEFAVELSFKSMQDFEPAAIVNQVEPLRQLMETRNKLRDLMTKVDRSEELENILEEVLNNTDNLAKLAGE
LDLGKKAPSESTEGAE*

  Nucleotide sequence: 531 bp    

>T6CP015666 NZ_NNJE01000049:c10193-9663 [Vibrio parahaemolyticus] [TssB]
ATGACGAGTATCCACTCGAAACTTTCACGAGTACGGAAGCCTCGTGTTCACATTACCTACGATGTTGAAACCGAAGGAAC
AACTTTGAAAAAAGAGCTTCCTTTTGTGGTGGGTGTTATGGGCGACTTTGCAGGCCAAAATACCGAAGCATTGAAACCAT
TAAAGGATCGCCGTTTCATTCAAATCGATCGTGATAACTTCGATGATGTACTTAAAAAGATGAGTCCATCGGTTAAGTTC
AAAGTCGCAAACAAGTTAGCAAATGACGATTCTGAATTTGCGGTTGAACTGAGCTTTAAATCGATGCAAGACTTTGAACC
AGCAGCGATTGTCAATCAAGTAGAACCATTGCGTCAGCTGATGGAAACTCGTAACAAACTGCGAGACTTGATGACTAAAG
TCGACCGTTCGGAAGAACTTGAAAACATCCTAGAAGAAGTTCTCAACAATACAGACAATTTGGCAAAACTAGCTGGTGAG
CTAGATCTTGGCAAAAAAGCGCCATCAGAAAGTACTGAGGGAGCAGAATAA