Detailed information of component protein


Summary

Component ID T6CP015665
Component protein type TssC
T6SS ID (Type) T6SS01250 experimental (Type i5)
Strain Vibrio parahaemolyticus strain D4
Replicon chromosome
Sequence Protein sequence (498 a.a.); Nucleotide sequence (1494 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) CGI87_RS17175
Coordinate (Strand) 8170..9663 (-)
NCBI ID 491606251
RefSeq NZ_NNJE01000049
Uniprot ID S5ITZ3_VIBPH, Q87HD1_VIBPA, A0A0D1RGP9_VIBPH
KEGG ID vpa:VPA1034, vpf:M634_23090
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 1.8e-129 64..372
VipB_2 PF18945.2 1.1e-43 383..492
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-497 MTTQVEKQLDPTVGEQTTSFLEQAIGATKQTEASRAEELIKTLTEEAMKGTVSWNKNLTVTFREAINLLDRQISEQLSEVMHHPELQKLEGSWRGLNYLVMNSETSSTLKIRMISITKKELHKDLSKAVEFDQSQIFKKVYESEFGSAGGEPYGALIGDYEFTNHPEDIESLRLMSNVAASGFSPFLSAASPALFGFDEWTELSKPRDLDKVFESLEYAQWRSFRESADSRFVSLTMPKVLARLPYGQATSPVEAFGFEEFDVDPVSGIAVNADHNDYCWMNSSYVLGVKLTDAFSKYGFCTAIRGAEGGGRVDNLPTHFFMSDDGDPDMKCPTEIGITDRREAELGKLGFLPLCHYKNTNYAVFFGAQTCQKPANHESPEVAANAAISARLPYMMATSRFAHYLKVMARDKIGSFMEAEDVESWLNRWILGYVNASEGGGQEIRAKYPLADARVQVKEIPGSPGSYNAVAWLKPWLQMEELTTSLRLVAKIPQSGG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9904 - -


  Protein sequence: 498 a.a.    

>T6CP015665 NZ_NNJE01000049:c9663-8170 [Vibrio parahaemolyticus] [TssC]
MTTQVEKQLDPTVGEQTTSFLEQAIGATKQTEASRAEELIKTLTEEAMKGTVSWNKNLTVTFREAINLLDRQISEQLSEV
MHHPELQKLEGSWRGLNYLVMNSETSSTLKIRMISITKKELHKDLSKAVEFDQSQIFKKVYESEFGSAGGEPYGALIGDY
EFTNHPEDIESLRLMSNVAASGFSPFLSAASPALFGFDEWTELSKPRDLDKVFESLEYAQWRSFRESADSRFVSLTMPKV
LARLPYGQATSPVEAFGFEEFDVDPVSGIAVNADHNDYCWMNSSYVLGVKLTDAFSKYGFCTAIRGAEGGGRVDNLPTHF
FMSDDGDPDMKCPTEIGITDRREAELGKLGFLPLCHYKNTNYAVFFGAQTCQKPANHESPEVAANAAISARLPYMMATSR
FAHYLKVMARDKIGSFMEAEDVESWLNRWILGYVNASEGGGQEIRAKYPLADARVQVKEIPGSPGSYNAVAWLKPWLQME
ELTTSLRLVAKIPQSGG*

  Nucleotide sequence: 1494 bp    

>T6CP015665 NZ_NNJE01000049:c9663-8170 [Vibrio parahaemolyticus] [TssC]
ATGACGACTCAAGTTGAAAAACAACTCGATCCTACGGTGGGTGAACAAACCACTTCATTTCTTGAACAGGCTATTGGTGC
GACGAAACAAACAGAAGCATCGAGAGCAGAAGAGCTGATCAAGACACTGACTGAAGAAGCTATGAAGGGGACGGTTTCTT
GGAATAAAAACCTAACCGTAACTTTCCGTGAAGCGATTAATTTGCTTGATAGACAGATTTCAGAGCAGCTTTCTGAAGTT
ATGCACCATCCTGAGCTACAAAAGTTAGAAGGCTCATGGCGTGGGCTGAATTACTTAGTCATGAATTCTGAGACAAGTTC
TACGCTGAAAATTCGCATGATCAGCATCACGAAGAAAGAGCTTCATAAAGACTTAAGTAAAGCGGTTGAATTCGATCAAA
GTCAAATCTTTAAAAAAGTGTACGAATCTGAATTTGGTAGCGCTGGTGGTGAACCGTATGGTGCTTTAATTGGTGACTAC
GAGTTTACAAACCATCCAGAAGATATTGAGTCTTTGCGTTTAATGTCGAATGTTGCTGCTTCGGGTTTCTCACCATTCTT
GTCTGCTGCTTCTCCTGCGCTATTTGGTTTTGATGAGTGGACAGAACTATCTAAACCGCGCGATTTAGATAAAGTCTTTG
AGTCGTTGGAATATGCGCAATGGCGCTCTTTCCGTGAAAGTGCAGATTCTCGTTTTGTAAGCTTAACGATGCCTAAAGTA
TTAGCCCGCCTACCATACGGCCAAGCTACGTCTCCTGTAGAAGCGTTTGGCTTTGAAGAGTTTGATGTGGATCCTGTGTC
GGGTATCGCCGTTAATGCTGATCACAATGATTATTGTTGGATGAACTCATCGTACGTGCTTGGCGTCAAACTGACGGATG
CATTTTCTAAGTATGGTTTCTGTACTGCTATTCGTGGCGCAGAGGGTGGTGGTCGAGTTGATAACCTACCAACACACTTC
TTCATGAGTGATGATGGTGATCCAGATATGAAGTGCCCAACGGAAATTGGCATTACAGACCGCCGTGAAGCGGAATTGGG
TAAACTGGGTTTCTTACCGTTGTGTCACTACAAAAATACAAACTATGCCGTGTTCTTTGGTGCTCAAACTTGTCAAAAAC
CAGCAAATCATGAATCTCCAGAAGTGGCAGCAAACGCGGCAATTTCAGCAAGACTTCCTTACATGATGGCAACCTCTCGT
TTTGCACATTATTTGAAAGTAATGGCTCGAGACAAGATCGGTAGCTTTATGGAAGCAGAAGACGTTGAATCTTGGTTGAA
CCGTTGGATTCTTGGCTATGTGAACGCTTCTGAAGGTGGCGGTCAAGAAATTCGTGCGAAATACCCTCTTGCCGACGCTC
GCGTACAAGTTAAGGAGATTCCAGGTTCTCCTGGTTCTTACAACGCGGTTGCTTGGCTCAAACCATGGCTTCAAATGGAA
GAGCTAACCACGTCTTTAAGACTCGTTGCTAAAATTCCTCAGTCGGGTGGCTAA