Detailed information of component protein


Summary

Component ID T6CP015664
Component protein type TssC
T6SS ID (Type) T6SS01250 experimental (Type i5)
Strain Vibrio parahaemolyticus strain D4
Replicon chromosome
Sequence Protein sequence (504 a.a.); Nucleotide sequence (1512 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) CGI87_RS17170
Coordinate (Strand) 6603..8114 (-)
NCBI ID 646367867
RefSeq NZ_NNJE01000049
Uniprot ID UPI0003DD85D7
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 2e-106 67..376
VipB_2 PF18945.2 1.2e-41 388..497
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-503 MTKIDALNFLDPEELTHEFTPMGLAEFDSHWLTQFVECSDSILAARIWLEGTQSIDFASFRHSIVSTINTIDTLLQKQLNEIIHHPDFQKLECSWVGVRYLCEQVDKPSSDSVKIKVLSATWNEVSKDALKAIEFDQSALFKLLYQNEYGMAGGEPFGVVVGDYQLRYDPRTNYFDRDISVLSKISQSAAAAFSPFVMSASPEIFGVNTFAELSSTRDVAAQFEQIDYVKWRQLRDNDDTKFIGLTAPNVLFRQPYKSDGSRNDQFEFQENIDDSNNDLLWGSGAFCFAAVSIRAFQEHGWFTHMRGIKQGDYSQGIIVAPTRNKTRINGKNDRDRCPLNLKVSERKEQELSDCGFIPISPVPETDMVGMTSNVSLYKPKLYEEKHVATNAKLTSMLQYTMCVSRIAHYVKVMGRDKIGGYQDAASLEREFQTWLHQYTTASDEASDELRAKYPLNEAKIKVREKRDTPGHFYSVIHLRPHFQLDQMVSSIKLITELSPEHLV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9971 - -


  Protein sequence: 504 a.a.    

>T6CP015664 NZ_NNJE01000049:c8114-6603 [Vibrio parahaemolyticus] [TssC]
MTKIDALNFLDPEELTHEFTPMGLAEFDSHWLTQFVECSDSILAARIWLEGTQSIDFASFRHSIVSTINTIDTLLQKQLN
EIIHHPDFQKLECSWVGVRYLCEQVDKPSSDSVKIKVLSATWNEVSKDALKAIEFDQSALFKLLYQNEYGMAGGEPFGVV
VGDYQLRYDPRTNYFDRDISVLSKISQSAAAAFSPFVMSASPEIFGVNTFAELSSTRDVAAQFEQIDYVKWRQLRDNDDT
KFIGLTAPNVLFRQPYKSDGSRNDQFEFQENIDDSNNDLLWGSGAFCFAAVSIRAFQEHGWFTHMRGIKQGDYSQGIIVA
PTRNKTRINGKNDRDRCPLNLKVSERKEQELSDCGFIPISPVPETDMVGMTSNVSLYKPKLYEEKHVATNAKLTSMLQYT
MCVSRIAHYVKVMGRDKIGGYQDAASLEREFQTWLHQYTTASDEASDELRAKYPLNEAKIKVREKRDTPGHFYSVIHLRP
HFQLDQMVSSIKLITELSPEHLV*

  Nucleotide sequence: 1512 bp    

>T6CP015664 NZ_NNJE01000049:c8114-6603 [Vibrio parahaemolyticus] [TssC]
ATGACGAAAATAGATGCATTGAACTTTCTAGACCCAGAGGAACTCACACACGAGTTTACACCGATGGGCCTGGCTGAGTT
TGACAGTCATTGGTTGACTCAATTTGTTGAATGTTCAGATTCAATACTTGCGGCACGAATTTGGTTGGAAGGCACGCAAT
CTATAGATTTTGCGAGTTTTCGCCATAGCATTGTGAGCACGATTAATACCATTGACACACTATTACAGAAGCAGCTCAAT
GAGATCATTCATCATCCAGATTTTCAGAAATTAGAGTGCAGTTGGGTAGGCGTTCGATATTTATGTGAACAAGTTGATAA
ACCATCGTCTGACTCCGTAAAAATTAAAGTTCTATCTGCAACATGGAATGAAGTAAGTAAAGATGCGCTCAAGGCTATCG
AGTTCGATCAGTCTGCCTTGTTTAAATTGCTCTATCAAAATGAATATGGAATGGCCGGAGGAGAACCCTTTGGTGTGGTT
GTGGGTGATTATCAATTACGTTATGACCCGAGAACAAATTATTTTGATAGAGATATCTCTGTGCTAAGCAAGATATCTCA
GTCTGCTGCTGCGGCATTTAGTCCATTTGTAATGTCTGCGTCTCCTGAAATATTCGGTGTGAACACATTTGCCGAACTTT
CGTCGACTCGAGACGTTGCGGCACAATTTGAACAAATTGATTATGTCAAATGGAGACAGTTGCGAGATAACGATGATACC
AAGTTTATTGGCTTAACCGCTCCTAACGTGCTTTTTCGACAACCCTACAAAAGTGATGGTTCTCGAAACGATCAATTTGA
ATTTCAAGAGAATATTGACGATTCAAATAACGATTTATTGTGGGGAAGTGGAGCCTTCTGTTTTGCTGCTGTTTCGATTA
GAGCATTCCAAGAGCACGGTTGGTTTACTCACATGCGAGGAATAAAACAGGGGGATTATAGTCAAGGCATTATTGTTGCT
CCTACAAGAAACAAAACGCGCATTAATGGCAAAAATGACAGAGATAGATGCCCTTTAAATCTAAAAGTCTCTGAGCGTAA
AGAGCAAGAACTGTCTGATTGTGGGTTCATTCCGATTTCACCAGTTCCTGAAACAGACATGGTCGGCATGACTTCCAATG
TTTCGTTGTATAAGCCAAAACTGTACGAAGAGAAGCATGTTGCGACTAATGCAAAACTCACCTCAATGCTCCAATACACG
ATGTGTGTATCGCGTATAGCACACTACGTCAAAGTTATGGGGCGAGACAAGATAGGTGGCTATCAGGACGCGGCATCGCT
CGAGAGGGAGTTTCAGACTTGGTTACATCAATATACAACGGCTTCAGACGAAGCTTCGGATGAACTCAGAGCTAAGTACC
CATTGAACGAAGCGAAGATCAAAGTTAGAGAGAAACGCGATACGCCAGGGCACTTCTACTCGGTGATACATTTACGCCCT
CATTTTCAGCTCGACCAAATGGTCTCAAGTATCAAATTAATTACGGAATTATCACCAGAACATTTGGTGTAA