Detailed information of component protein


Summary

Component ID T6CP015662
Component protein type TssF
T6SS ID (Type) T6SS01250 experimental (Type i5)
Strain Vibrio parahaemolyticus strain D4
Replicon chromosome
Sequence Protein sequence (608 a.a.); Nucleotide sequence (1824 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) CGI87_RS17155
Coordinate (Strand) 3502..5325 (-)
NCBI ID 526016835
RefSeq NZ_NNJE01000049
Uniprot ID UPI00035925FF
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 9.5e-188 1..603
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-607 MSEEFLKYYNRELAYLRHKGQEFGEQYPKIAARLRISEEQVEDPHVERLLEGCAFLTARIRQSLDNSYPQFTESLMGQLYPDFHAPIPSMSVIKLNCSESTTSSFAIPVGERVEVSAPGYQDCQFRTGYPTTMYPLDIISGSFENAPFKPTGSKWEHNAHSVLRCQLSAHDSESSINSMGIDCLRLYLNGQTQLTLKLYQMLFQSLIGLSIVLDGKEIMPLTKRHLQSVGFGDEEQVVPYSKRSFSGSRLLVEYLHFPEKFMFFDLIELGLDKLEIQGQVEICFYFDTSDDWLPKQVDEESVMVGCVPIVNLFKSTMEPKRLLPTEYEYQLSPQYQDAESNEVVSISDVTLRNWNKTYEHLPCYHSGEHTHYMSASEVYWLMRREDKNWAGGYDEPGRETYVSFVDKQYQLFSPESRDNWLMYVEAECCNRNLPQKIPFGGGLPKVQLPNVDDNFKSIRCLTSLSETLRPEMDESTRWQLTKLLTLNHFTEADGLATLKQTLNLYAFAGTPETKAVIDALVKLEFEHTTGRVSQKGKVGFAHGVKLVLTVSDQILPKEQIFLLGSVLSVYFAQYAEINVFTQLEIKLKSTSSSFHVWPALTGDKVLL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9953 - -


  Protein sequence: 608 a.a.    

>T6CP015662 NZ_NNJE01000049:c5325-3502 [Vibrio parahaemolyticus] [TssF]
MSEEFLKYYNRELAYLRHKGQEFGEQYPKIAARLRISEEQVEDPHVERLLEGCAFLTARIRQSLDNSYPQFTESLMGQLY
PDFHAPIPSMSVIKLNCSESTTSSFAIPVGERVEVSAPGYQDCQFRTGYPTTMYPLDIISGSFENAPFKPTGSKWEHNAH
SVLRCQLSAHDSESSINSMGIDCLRLYLNGQTQLTLKLYQMLFQSLIGLSIVLDGKEIMPLTKRHLQSVGFGDEEQVVPY
SKRSFSGSRLLVEYLHFPEKFMFFDLIELGLDKLEIQGQVEICFYFDTSDDWLPKQVDEESVMVGCVPIVNLFKSTMEPK
RLLPTEYEYQLSPQYQDAESNEVVSISDVTLRNWNKTYEHLPCYHSGEHTHYMSASEVYWLMRREDKNWAGGYDEPGRET
YVSFVDKQYQLFSPESRDNWLMYVEAECCNRNLPQKIPFGGGLPKVQLPNVDDNFKSIRCLTSLSETLRPEMDESTRWQL
TKLLTLNHFTEADGLATLKQTLNLYAFAGTPETKAVIDALVKLEFEHTTGRVSQKGKVGFAHGVKLVLTVSDQILPKEQI
FLLGSVLSVYFAQYAEINVFTQLEIKLKSTSSSFHVWPALTGDKVLL*

  Nucleotide sequence: 1824 bp    

>T6CP015662 NZ_NNJE01000049:c5325-3502 [Vibrio parahaemolyticus] [TssF]
ATGAGTGAAGAGTTTCTAAAATACTACAATCGTGAATTGGCCTATCTGCGACACAAAGGACAAGAGTTTGGCGAGCAATA
TCCTAAAATTGCGGCTAGGTTACGTATCAGCGAAGAACAAGTTGAAGACCCACATGTTGAACGTCTGTTGGAAGGTTGTG
CTTTTTTAACCGCTCGGATAAGACAAAGTCTGGATAACAGTTACCCACAGTTTACGGAATCACTGATGGGACAGTTATAT
CCGGACTTTCATGCGCCAATTCCTTCGATGTCAGTAATCAAATTGAACTGTTCAGAGTCAACCACTAGTTCATTTGCTAT
TCCTGTGGGTGAAAGAGTCGAAGTTAGTGCCCCTGGATATCAAGATTGCCAGTTTCGAACCGGTTACCCGACAACAATGT
ATCCACTCGATATTATCTCTGGTTCATTTGAGAACGCGCCTTTCAAGCCTACTGGCTCTAAGTGGGAGCACAATGCGCAC
TCTGTACTAAGGTGTCAGCTGAGTGCTCATGATTCAGAGTCATCTATCAATTCCATGGGTATCGATTGTTTGCGTTTGTA
CTTAAATGGACAGACGCAATTAACACTCAAGCTATATCAAATGTTATTCCAAAGTTTGATTGGTCTTTCAATCGTGTTGG
ATGGTAAAGAAATCATGCCTCTAACTAAGAGGCATCTTCAATCGGTTGGTTTTGGGGACGAGGAGCAAGTCGTTCCTTAC
AGTAAGAGAAGTTTTTCGGGATCTCGTTTATTGGTCGAGTACCTTCATTTCCCAGAAAAATTCATGTTCTTTGACTTGAT
TGAGCTCGGCTTAGATAAGTTAGAGATTCAAGGGCAGGTCGAGATTTGCTTTTACTTCGATACAAGCGATGACTGGCTAC
CAAAGCAAGTAGACGAGGAAAGTGTCATGGTTGGCTGTGTTCCCATTGTAAATCTGTTCAAATCAACCATGGAACCTAAA
CGTCTCCTTCCAACAGAGTACGAGTATCAATTATCTCCTCAGTACCAAGATGCAGAGAGTAATGAAGTTGTCTCGATTTC
TGATGTTACCTTGAGAAACTGGAACAAAACTTACGAGCATTTACCCTGTTACCATTCAGGAGAGCACACGCACTACATGA
GCGCGAGTGAAGTGTATTGGTTAATGAGACGAGAGGATAAAAACTGGGCCGGTGGCTACGATGAGCCTGGTCGAGAGACT
TATGTTTCTTTTGTTGATAAGCAATACCAGTTGTTCAGCCCTGAAAGCAGAGATAATTGGCTGATGTATGTGGAAGCTGA
GTGTTGCAATCGTAATTTGCCACAAAAAATTCCATTTGGTGGCGGGCTACCAAAGGTTCAGTTACCCAATGTTGATGATA
ATTTTAAATCAATTAGGTGCTTAACGTCTCTCTCCGAAACGCTTAGGCCAGAGATGGATGAAAGCACACGATGGCAGCTT
ACCAAGCTATTAACATTGAACCATTTTACTGAAGCTGACGGCTTAGCAACGTTAAAACAAACATTGAACTTGTATGCATT
TGCAGGCACCCCCGAAACAAAAGCCGTTATAGATGCTCTAGTCAAGCTAGAGTTTGAACATACAACCGGTAGGGTTAGTC
AGAAAGGAAAAGTTGGTTTTGCACATGGAGTAAAGCTGGTTCTAACAGTATCCGATCAGATACTGCCAAAAGAGCAGATC
TTTTTATTGGGTAGCGTGTTATCTGTTTACTTTGCTCAATATGCGGAGATTAACGTGTTTACGCAGTTAGAGATAAAGTT
GAAATCAACCAGCAGCTCCTTTCACGTATGGCCTGCGCTGACAGGTGATAAGGTGTTGTTATGA