Detailed information of component protein


Summary

Component ID T6CP015661
Component protein type TssG
T6SS ID (Type) T6SS01250 experimental (Type i5)
Strain Vibrio parahaemolyticus strain D4
Replicon chromosome
Sequence Protein sequence (322 a.a.); Nucleotide sequence (966 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) CGI87_RS17150
Coordinate (Strand) 2540..3505 (-)
NCBI ID 526016834
RefSeq NZ_NNJE01000049
Uniprot ID UPI00035900B5
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 2.1e-70 11..306

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-321 MSSEDFYRELKQRSLFEAIHLIEQELLKVESQIGTDALPKNEKLNLKVNASLGFENAQLVSTKPLGKDKLALETNLIGLTGEQGVLPQHYSELALHRLKEGDHAMVDFYDIFNHRLLSLYYRSWQLSQLTIQARAHAKNQRSPLTDCMSSLTGDGNDLALHYGGMYASPTRSKGALKSILECLSGCQIRIHEFQGQWMRLSKSEQTRLASKSMPEGQFAQLGAGASLGKRAWNINASTTIEFLPKERKQVKNLLPKTNTLKTIKQVAGDFIGKHKHVKWQLTTKHSLLPQVQISKQQGQLGVGSVLKKHERTEDRNITITV



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9908 - -



  Protein sequence: 322 a.a.    

>T6CP015661 NZ_NNJE01000049:c3505-2540 [Vibrio parahaemolyticus] [TssG]
MSSEDFYRELKQRSLFEAIHLIEQELLKVESQIGTDALPKNEKLNLKVNASLGFENAQLVSTKPLGKDKLALETNLIGLT
GEQGVLPQHYSELALHRLKEGDHAMVDFYDIFNHRLLSLYYRSWQLSQLTIQARAHAKNQRSPLTDCMSSLTGDGNDLAL
HYGGMYASPTRSKGALKSILECLSGCQIRIHEFQGQWMRLSKSEQTRLASKSMPEGQFAQLGAGASLGKRAWNINASTTI
EFLPKERKQVKNLLPKTNTLKTIKQVAGDFIGKHKHVKWQLTTKHSLLPQVQISKQQGQLGVGSVLKKHERTEDRNITIT
V*

  Nucleotide sequence: 966 bp    

>T6CP015661 NZ_NNJE01000049:c3505-2540 [Vibrio parahaemolyticus] [TssG]
ATGAGCTCAGAGGACTTCTACCGCGAGCTAAAGCAACGTTCTTTGTTTGAAGCTATTCATCTTATTGAGCAAGAGCTTTT
GAAAGTTGAATCGCAAATTGGAACAGATGCATTACCAAAAAACGAGAAACTTAACTTAAAGGTCAATGCGTCTTTAGGGT
TTGAGAATGCGCAACTCGTTTCTACTAAACCATTAGGTAAAGATAAATTAGCGCTTGAGACAAATTTGATTGGCTTGACG
GGGGAGCAGGGTGTACTGCCTCAGCATTACAGTGAGCTTGCATTACATCGACTGAAAGAAGGCGATCATGCGATGGTGGA
CTTCTATGACATTTTTAACCATCGGCTTTTATCCCTCTATTATCGAAGTTGGCAATTGAGTCAGTTAACCATACAAGCGC
GTGCGCATGCAAAAAATCAGCGCTCCCCATTGACTGATTGCATGTCGTCATTGACTGGCGATGGGAATGATCTTGCACTG
CATTATGGCGGCATGTATGCATCTCCAACACGAAGTAAAGGTGCATTGAAGAGCATTTTGGAATGTTTGTCTGGTTGCCA
AATTCGTATTCACGAGTTTCAAGGTCAATGGATGCGACTGTCTAAATCTGAACAAACTCGTTTGGCATCGAAAAGTATGC
CCGAAGGCCAGTTTGCACAACTCGGTGCTGGTGCGTCACTAGGGAAAAGAGCCTGGAATATCAATGCAAGTACAACAATT
GAGTTTCTCCCAAAGGAAAGAAAGCAAGTCAAAAATCTGTTACCCAAGACCAATACATTGAAAACGATAAAACAGGTAGC
AGGTGACTTCATTGGCAAACACAAGCACGTTAAATGGCAACTCACGACTAAACATAGTCTATTGCCTCAAGTTCAAATAT
CTAAGCAACAAGGTCAGTTAGGTGTCGGCTCTGTACTGAAAAAACATGAACGTACGGAAGATCGCAACATAACAATTACG
GTTTAA