Detailed information of component protein


Summary

Component ID T6CP015659
Component protein type TssH
T6SS ID (Type) T6SS01247 experimental (Type i1)
Strain Vibrio parahaemolyticus strain T9109
Replicon chromosome
Sequence Protein sequence (891 a.a.); Nucleotide sequence (2673 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PO79_RS04655
Coordinate (Strand) 234863..237535 (+)
NCBI ID 545084342
RefSeq NZ_JTGR01000038
Uniprot ID UPI00038E3468
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 7.8e-44 624..788
AAA_lid_9 PF17871.3 6.3e-31 357..452
ClpB_D2-small PF10431.11 1.4e-13 795..869
AAA PF00004.31 7.4e-10 220..348
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-890 MININLSSLIQRLHPIAKVALEDAAALAVSEKANEVQIEHYLLSLLERPNSDFDVLLSHFDCSENLLRQSVRSTLDTNAKGNGSKPVFSALLIEWLQESWLVSSLDLSETQIRSGALLLTLVSNPLRYGQHGYASILEAVNPDSLKRNFAELTSHSIEAQVATSEKTQAREDGSALSKFTTDFTGKARKGEIDPVFCRDQEIRQIVDILARRRKNNPIAVGEPGVGKTAVVEGLALKIVQGDVPDNLKGVELYGLDMGLLQAGASVKGEFEKRLNAVLDEVKNSPTPIILFIDEAHTLVGGGNQAGGSDAANLLKPALARGEVKTIAATTWSEYKKYFEKDPALARRFQLVKLDEPSPEQAALIIRGLRPAYEKSHNVYVRDDAITAAAALSARYISGRQLPDKAIDVLDTACARVNISLNAIPASVETLQQELAAQQRELEALERDALQQTGDKHSLANIPDLKLAMETTKEELAEQEAQWHKEKEQIQEMIALRSRLHELVFGKVNEEELVVDEDSEQDVSPYTEMDEEAVRIAISACQEQLDAIRNGNPLVHFEVGPDEVSHVISDWTGIPMGKMLQDEAETTLKLKESLTQSIKGQEYAIDALSEGIQTAKAGLGNPDAPTGVFLLVGPSGVGKTETARAIADQMFGGERFMTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGMLTEAVRQRPYSVVLLDEVEKADPEVLNLFYQVFDKGTLNDGEGRTIDFKNTLIIMTSNLATHEIESLVHQSKDIDANIIAEAIRPTLNQHFKPALLARMSVLPFVPLSDEAMTEIIHHKLNKVSQRLQSHHKLSLSYEESLVEFVLGNCRLAETGARNIDAVINRQLLPQLSTQLLVHDKDDSHTQITVSVDEQGTLTYAFS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9911 - -


  Protein sequence: 891 a.a.    

>T6CP015659 NZ_JTGR01000038:234863-237535 [Vibrio parahaemolyticus] [TssH]
MININLSSLIQRLHPIAKVALEDAAALAVSEKANEVQIEHYLLSLLERPNSDFDVLLSHFDCSENLLRQSVRSTLDTNAK
GNGSKPVFSALLIEWLQESWLVSSLDLSETQIRSGALLLTLVSNPLRYGQHGYASILEAVNPDSLKRNFAELTSHSIEAQ
VATSEKTQAREDGSALSKFTTDFTGKARKGEIDPVFCRDQEIRQIVDILARRRKNNPIAVGEPGVGKTAVVEGLALKIVQ
GDVPDNLKGVELYGLDMGLLQAGASVKGEFEKRLNAVLDEVKNSPTPIILFIDEAHTLVGGGNQAGGSDAANLLKPALAR
GEVKTIAATTWSEYKKYFEKDPALARRFQLVKLDEPSPEQAALIIRGLRPAYEKSHNVYVRDDAITAAAALSARYISGRQ
LPDKAIDVLDTACARVNISLNAIPASVETLQQELAAQQRELEALERDALQQTGDKHSLANIPDLKLAMETTKEELAEQEA
QWHKEKEQIQEMIALRSRLHELVFGKVNEEELVVDEDSEQDVSPYTEMDEEAVRIAISACQEQLDAIRNGNPLVHFEVGP
DEVSHVISDWTGIPMGKMLQDEAETTLKLKESLTQSIKGQEYAIDALSEGIQTAKAGLGNPDAPTGVFLLVGPSGVGKTE
TARAIADQMFGGERFMTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGMLTEAVRQRPYSVVLLDEVEKADPEVLNLFYQV
FDKGTLNDGEGRTIDFKNTLIIMTSNLATHEIESLVHQSKDIDANIIAEAIRPTLNQHFKPALLARMSVLPFVPLSDEAM
TEIIHHKLNKVSQRLQSHHKLSLSYEESLVEFVLGNCRLAETGARNIDAVINRQLLPQLSTQLLVHDKDDSHTQITVSVD
EQGTLTYAFS*

  Nucleotide sequence: 2673 bp    

>T6CP015659 NZ_JTGR01000038:234863-237535 [Vibrio parahaemolyticus] [TssH]
ATGATAAATATAAACCTTTCTTCATTAATTCAGCGTCTACACCCGATAGCTAAAGTAGCATTAGAAGATGCCGCAGCACT
CGCAGTCTCGGAAAAAGCAAACGAAGTTCAAATTGAGCATTATTTACTGAGTCTATTAGAAAGGCCAAATAGTGATTTTG
ACGTCTTATTAAGTCATTTTGATTGTTCTGAGAACTTATTGAGACAATCGGTTCGATCCACACTCGATACCAACGCCAAA
GGAAATGGCAGCAAACCTGTTTTTTCTGCTTTATTAATCGAATGGTTACAAGAAAGCTGGCTGGTTTCTTCTTTAGATCT
ATCCGAAACACAAATCCGCTCTGGCGCCCTACTCCTTACTCTTGTTAGCAACCCTCTGCGTTATGGCCAACATGGTTACG
CCTCTATTCTTGAAGCAGTAAACCCTGATAGCCTTAAACGTAACTTTGCAGAACTAACAAGCCACTCTATTGAGGCGCAA
GTCGCAACTTCAGAGAAAACTCAAGCACGCGAAGATGGTTCAGCACTGAGCAAGTTCACGACAGACTTCACTGGTAAAGC
ACGCAAAGGTGAAATCGATCCTGTTTTCTGCCGTGACCAAGAAATCCGCCAAATTGTAGACATTCTTGCTCGTCGCCGTA
AAAACAACCCTATTGCCGTTGGTGAGCCGGGCGTTGGTAAAACCGCAGTAGTAGAAGGCTTGGCACTTAAGATTGTACAA
GGTGACGTACCAGACAACCTTAAAGGTGTTGAGCTTTACGGCTTGGACATGGGTCTTCTGCAAGCTGGCGCAAGCGTAAA
AGGCGAATTCGAAAAACGCCTAAATGCAGTATTGGATGAAGTGAAAAACTCGCCAACACCGATCATCTTGTTCATCGATG
AAGCGCACACCCTTGTTGGCGGCGGCAACCAAGCGGGCGGCAGCGACGCTGCTAACTTATTAAAACCTGCCCTAGCACGT
GGTGAAGTAAAGACAATCGCAGCAACAACATGGTCGGAATACAAAAAGTACTTTGAGAAAGATCCAGCTCTTGCGCGTCG
TTTCCAACTGGTGAAACTCGACGAACCGTCTCCTGAGCAAGCAGCATTGATCATTCGTGGTCTGCGCCCGGCGTACGAGA
AATCTCACAACGTTTACGTGCGTGATGACGCCATCACTGCTGCGGCAGCACTTTCTGCGCGTTACATCTCTGGTCGTCAA
CTACCAGACAAAGCGATCGATGTACTAGATACGGCGTGTGCACGAGTGAACATCAGCCTTAATGCCATTCCTGCTTCTGT
AGAGACTCTGCAGCAAGAACTTGCAGCTCAACAGCGCGAGCTTGAAGCACTTGAGCGTGATGCTCTGCAGCAAACTGGCG
ACAAGCACAGCCTTGCTAATATTCCAGACCTAAAACTAGCAATGGAAACAACGAAAGAAGAGCTAGCAGAACAAGAAGCA
CAATGGCACAAAGAAAAAGAGCAGATCCAAGAGATGATTGCTCTACGCTCTCGCTTACATGAACTGGTCTTTGGCAAAGT
AAATGAAGAAGAGCTTGTTGTAGACGAAGATTCAGAACAAGACGTTTCTCCATATACAGAAATGGATGAAGAAGCGGTCC
GCATTGCGATTTCAGCATGCCAAGAACAGTTAGACGCAATCCGCAATGGCAACCCATTAGTTCACTTTGAAGTTGGGCCA
GATGAAGTCAGCCACGTTATCTCAGACTGGACTGGCATTCCAATGGGTAAGATGCTTCAAGACGAAGCAGAAACCACGCT
AAAACTGAAAGAAAGCCTAACACAAAGCATCAAAGGCCAAGAATACGCTATCGATGCACTGTCTGAAGGCATTCAAACCG
CAAAAGCTGGCTTGGGTAATCCAGACGCACCGACAGGCGTATTCCTGCTAGTTGGTCCTAGTGGCGTGGGTAAAACCGAA
ACTGCTCGTGCGATCGCTGATCAAATGTTTGGTGGTGAGCGCTTTATGACGACCATTAACATGTCTGAGTTCCAAGAGAA
GCACACGGTATCTCGCCTAATCGGTTCGCCTCCGGGTTACGTAGGTTACGGTGAAGGCGGCATGCTGACAGAGGCGGTAC
GTCAGCGTCCATATTCTGTTGTACTTCTCGATGAAGTAGAAAAAGCCGATCCAGAAGTGTTGAACCTGTTCTACCAAGTG
TTCGACAAAGGTACGCTGAACGACGGTGAAGGTCGTACTATTGACTTCAAGAACACGCTGATCATCATGACCAGCAACCT
TGCGACGCACGAAATTGAATCTCTGGTTCACCAGTCTAAAGACATTGATGCTAACATCATCGCAGAAGCTATCCGCCCTA
CTTTGAACCAACACTTCAAACCAGCGCTGTTGGCGCGTATGTCTGTGCTTCCGTTTGTTCCGCTATCTGATGAAGCAATG
ACAGAAATCATTCACCATAAGCTGAACAAAGTTTCTCAGCGTCTACAGAGCCATCACAAGTTGTCTCTGAGCTACGAAGA
AAGTTTGGTTGAGTTCGTACTAGGTAACTGTCGCCTTGCTGAAACGGGCGCGCGTAACATCGACGCGGTCATCAACCGTC
AGTTACTGCCTCAGCTATCGACACAGCTATTGGTGCATGATAAGGATGATTCACACACGCAAATCACAGTTTCTGTCGAT
GAGCAAGGAACACTGACCTATGCGTTCAGCTAA