Detailed information of component protein


Summary

Component ID T6CP015657
Component protein type TssI
T6SS ID (Type) T6SS01247 experimental (Type i1)
Strain Vibrio parahaemolyticus strain T9109
Replicon chromosome
Sequence Protein sequence (693 a.a.); Nucleotide sequence (2079 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PO79_RS04645
Coordinate (Strand) 231739..233817 (-)
NCBI ID 491637679
RefSeq NZ_JTGR01000038
Uniprot ID A0A2R9VRD7_VIBPH
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 2.3e-77 26..331
Phage_base_V PF04717.14 8.8e-15 387..455
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-692 MVNDVEFKFEVPGCGHEFRVESFQVNEELSKPFHISLSLLSLDPDISFDSLIRKAGTLTLYGQGLSAARIFNGVVNEVRYLGTGRRFSRYQLVLVPQAWFLSQRQDCRIFQQKSAKDIITEVLDDGSVTDYRFELSGIYPPKEYALQYRESDLHFVQRMMAEHGMWYYFDHTDSNHTMVIVDSNDAIAPLVSSPLNASYIGPIVYHADSGGVADREHISDLELVNRVRTGQVTYTDYNYEQPKIPQEMTHAGDLDQDLKQFDYPGRYVDPVMGQVRTTEWMSEHIVDNQQVEASSDVMRLASGYSFNISDHPRSEINRDYIMLSVMHTGQDPQVHEDEASGMPTTYYNQFTCIPRDVVFKAPKLAAPVVDGPQTAVVVGPAGEEIYTDKLGRIKVQFHWDRYGNNDEHASCWIRVSQSMAAPTWGAVYLPRIGHEVVVTFLEGDPDRPLVTGAVYNGLHFPPYSLPENKTRTTFRTQTHKGTGYNELSFEDEANQEEVYIHAQKDMSTKVLNNRYRDIGQDEFLKVARHQTNEVHGDHKETIDGHKTTQVNSTFTETVEQDVTVTYNANETQYVKNNSDLEIGDNRTTKIGKNDDLDVGENSNLTVGASKSSDIGADDNQTVGGNLTVSVKGNTSYKADGATQIISGDKIVLKTGGSSLVMNSDGSIKLSGSSITIEGSDKVVVKGGNVAIN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9826 - -


  Protein sequence: 693 a.a.    

>T6CP015657 NZ_JTGR01000038:c233817-231739 [Vibrio parahaemolyticus] [TssI]
MVNDVEFKFEVPGCGHEFRVESFQVNEELSKPFHISLSLLSLDPDISFDSLIRKAGTLTLYGQGLSAARIFNGVVNEVRY
LGTGRRFSRYQLVLVPQAWFLSQRQDCRIFQQKSAKDIITEVLDDGSVTDYRFELSGIYPPKEYALQYRESDLHFVQRMM
AEHGMWYYFDHTDSNHTMVIVDSNDAIAPLVSSPLNASYIGPIVYHADSGGVADREHISDLELVNRVRTGQVTYTDYNYE
QPKIPQEMTHAGDLDQDLKQFDYPGRYVDPVMGQVRTTEWMSEHIVDNQQVEASSDVMRLASGYSFNISDHPRSEINRDY
IMLSVMHTGQDPQVHEDEASGMPTTYYNQFTCIPRDVVFKAPKLAAPVVDGPQTAVVVGPAGEEIYTDKLGRIKVQFHWD
RYGNNDEHASCWIRVSQSMAAPTWGAVYLPRIGHEVVVTFLEGDPDRPLVTGAVYNGLHFPPYSLPENKTRTTFRTQTHK
GTGYNELSFEDEANQEEVYIHAQKDMSTKVLNNRYRDIGQDEFLKVARHQTNEVHGDHKETIDGHKTTQVNSTFTETVEQ
DVTVTYNANETQYVKNNSDLEIGDNRTTKIGKNDDLDVGENSNLTVGASKSSDIGADDNQTVGGNLTVSVKGNTSYKADG
ATQIISGDKIVLKTGGSSLVMNSDGSIKLSGSSITIEGSDKVVVKGGNVAIN*

  Nucleotide sequence: 2079 bp    

>T6CP015657 NZ_JTGR01000038:c233817-231739 [Vibrio parahaemolyticus] [TssI]
ATGGTGAATGACGTAGAATTTAAATTTGAAGTGCCAGGGTGTGGGCACGAGTTTCGAGTAGAAAGCTTTCAAGTAAATGA
AGAGCTTTCGAAACCTTTTCACATCAGTCTCTCATTACTTTCACTTGATCCAGATATCTCTTTTGATTCGTTAATACGAA
AAGCAGGTACACTGACTCTTTATGGACAAGGCTTAAGCGCGGCACGCATATTCAATGGTGTGGTGAACGAAGTTCGTTAT
TTGGGTACAGGCCGTCGCTTCTCTCGCTATCAGTTAGTTTTGGTTCCGCAGGCTTGGTTCTTATCACAACGCCAAGACTG
TCGTATTTTCCAACAAAAATCAGCGAAAGATATAATTACAGAGGTGCTTGATGATGGTTCAGTGACCGACTATCGTTTTG
AACTATCTGGTATTTATCCACCAAAAGAGTACGCGCTGCAATACCGTGAGTCAGACCTACACTTTGTTCAGCGTATGATG
GCAGAACACGGTATGTGGTACTATTTCGACCACACCGATTCAAACCACACAATGGTCATTGTCGATAGTAACGATGCCAT
TGCTCCACTGGTTAGCTCTCCTCTCAATGCATCTTATATTGGGCCGATTGTATATCACGCCGATAGTGGGGGTGTTGCTG
ACCGTGAGCATATCTCCGATCTCGAGTTAGTTAACCGTGTGAGAACGGGTCAGGTTACTTACACTGACTACAATTACGAG
CAGCCAAAGATCCCGCAAGAGATGACTCATGCAGGTGATCTGGACCAAGATTTAAAGCAGTTTGATTATCCTGGACGTTA
TGTTGATCCTGTAATGGGGCAGGTGAGAACCACTGAGTGGATGTCTGAGCACATTGTCGATAATCAGCAAGTAGAAGCGA
GCAGTGATGTGATGCGTTTGGCGTCTGGTTACAGCTTTAACATCAGTGACCATCCTCGCTCTGAAATCAACCGTGATTAC
ATCATGTTATCCGTCATGCACACAGGGCAAGACCCACAAGTGCACGAAGACGAAGCGAGTGGCATGCCAACTACTTACTA
CAACCAGTTCACGTGTATTCCACGTGATGTTGTATTCAAAGCGCCCAAGTTGGCGGCTCCAGTAGTGGATGGTCCGCAAA
CTGCGGTTGTAGTTGGTCCTGCAGGGGAGGAGATCTACACCGATAAACTAGGACGAATTAAGGTTCAGTTCCATTGGGAT
CGCTATGGTAACAACGATGAACATGCAAGTTGTTGGATTCGTGTGAGTCAATCAATGGCTGCTCCAACGTGGGGCGCGGT
TTACTTGCCACGTATTGGTCATGAAGTCGTAGTCACCTTCCTTGAAGGCGACCCAGATCGCCCATTGGTGACTGGCGCAG
TTTATAACGGTCTTCACTTCCCTCCGTACTCGTTGCCTGAGAACAAAACTCGTACTACGTTCCGTACGCAAACGCACAAA
GGCACCGGCTACAACGAACTGAGTTTTGAAGACGAAGCGAACCAAGAAGAAGTCTACATTCATGCTCAAAAAGACATGTC
GACCAAAGTTCTCAACAATCGTTACCGAGATATCGGTCAGGATGAGTTCTTAAAGGTTGCGCGTCATCAGACGAACGAAG
TCCATGGTGATCATAAAGAAACCATTGATGGCCACAAAACAACCCAAGTAAACAGCACTTTTACCGAGACAGTAGAGCAA
GACGTTACCGTTACATACAACGCCAACGAAACCCAATATGTGAAGAACAATTCTGATTTGGAAATTGGTGATAACCGCAC
AACCAAGATCGGCAAGAACGATGACTTGGATGTGGGTGAAAACAGTAACTTAACTGTTGGTGCATCAAAAAGCTCGGACA
TTGGTGCGGATGATAACCAAACAGTGGGTGGCAACTTAACCGTATCGGTAAAAGGCAATACATCTTACAAAGCCGATGGC
GCGACACAGATCATCAGTGGTGACAAGATTGTACTGAAAACAGGCGGTTCTTCTTTAGTGATGAACAGTGATGGTTCAAT
CAAGCTCTCAGGGTCTTCAATCACCATTGAAGGCAGCGATAAAGTCGTCGTGAAAGGTGGTAACGTAGCGATTAACTAA