Detailed information of component protein


Summary

Component ID T6CP015656
Component protein type TagE
T6SS ID (Type) T6SS01247 experimental (Type i1)
Strain Vibrio parahaemolyticus strain T9109
Replicon chromosome
Sequence Protein sequence (668 a.a.); Nucleotide sequence (2004 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PO79_RS04620
Coordinate (Strand) 225709..227712 (-)
NCBI ID 646462483
RefSeq NZ_JTGR01000038
Uniprot ID UPI0004297FF2
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Pkinase PF00069.27 3.3e-29 64..244
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-667 VSDIQGAAKGYIDQLVVKAIEKKKLNEQRLAQKNKPKLEYVLFSQFDVLDTLPSKNGRTTVYHLAKKGQPEKQICCKVVNEDAPEVANKMLVNEASRLELSQHPSVADFIKFGNEFERPYLMYEWIQGESLAEKMERYSSKGFRHDHIAWLVYQLAGALEFMHTRGICHLDIKPSNVLVSEGDYVKLIDFGAARYIGEIESHAEASLSYASPLYLETGTTEPQDDVYSLALLSGHLFLGAIFGDAWHKQLKDRKRPALIPNHIWKLLKQVINNPRGHGYTAISFAQQLARIDTQSIDSHSNAPIFSSLRNADLLLTHCRPQDKAGYGRFKVLEASLVLSVVAITGNYLYQQSQPEWKTIVKSEPTISKTETPLVSNIKPAQTASFLAQPPWIIEKALNDMEKDVVSTAPYREAYQVQQMKLSALYKQNQAQLMSYQALADDLPKQLVDLRKELVLLREKLVDDGALFPYADKTLTQVMAGLNTASVNSMKISAVAGSKDERIANLILDGEAKLADEEMKAAWLLNQSEAYFYSQVLPNKVMANINDSIEQHAKDHYYTKAIEEAKAAKTYFGNAPELNKKVKDLIVARSEYILFSTVTEQSVFDKQKLHDSLADLERNAPTKFGEITDLLESMATDSIDKSHQLSRPARGAIAIERALRDYLAEERS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9972 - -


  Protein sequence: 668 a.a.    

>T6CP015656 NZ_JTGR01000038:c227712-225709 [Vibrio parahaemolyticus] [TagE]
VSDIQGAAKGYIDQLVVKAIEKKKLNEQRLAQKNKPKLEYVLFSQFDVLDTLPSKNGRTTVYHLAKKGQPEKQICCKVVN
EDAPEVANKMLVNEASRLELSQHPSVADFIKFGNEFERPYLMYEWIQGESLAEKMERYSSKGFRHDHIAWLVYQLAGALE
FMHTRGICHLDIKPSNVLVSEGDYVKLIDFGAARYIGEIESHAEASLSYASPLYLETGTTEPQDDVYSLALLSGHLFLGA
IFGDAWHKQLKDRKRPALIPNHIWKLLKQVINNPRGHGYTAISFAQQLARIDTQSIDSHSNAPIFSSLRNADLLLTHCRP
QDKAGYGRFKVLEASLVLSVVAITGNYLYQQSQPEWKTIVKSEPTISKTETPLVSNIKPAQTASFLAQPPWIIEKALNDM
EKDVVSTAPYREAYQVQQMKLSALYKQNQAQLMSYQALADDLPKQLVDLRKELVLLREKLVDDGALFPYADKTLTQVMAG
LNTASVNSMKISAVAGSKDERIANLILDGEAKLADEEMKAAWLLNQSEAYFYSQVLPNKVMANINDSIEQHAKDHYYTKA
IEEAKAAKTYFGNAPELNKKVKDLIVARSEYILFSTVTEQSVFDKQKLHDSLADLERNAPTKFGEITDLLESMATDSIDK
SHQLSRPARGAIAIERALRDYLAEERS*

  Nucleotide sequence: 2004 bp    

>T6CP015656 NZ_JTGR01000038:c227712-225709 [Vibrio parahaemolyticus] [TagE]
GTGTCTGATATTCAGGGTGCAGCCAAAGGATACATTGATCAGTTGGTTGTTAAAGCCATTGAGAAAAAGAAACTGAACGA
GCAAAGATTGGCGCAGAAAAATAAGCCAAAGCTTGAGTACGTTCTTTTTTCACAATTTGATGTATTAGACACGTTGCCAT
CTAAAAATGGTAGAACGACGGTTTACCACCTCGCAAAAAAAGGCCAGCCAGAAAAACAAATTTGCTGCAAAGTCGTCAAT
GAAGACGCCCCAGAAGTCGCAAACAAAATGTTGGTGAATGAGGCAAGCAGATTAGAACTTTCTCAGCATCCAAGTGTTGC
GGACTTTATTAAGTTCGGCAACGAGTTTGAACGACCATATTTAATGTATGAGTGGATTCAAGGCGAATCACTAGCGGAAA
AAATGGAACGCTATTCTTCCAAAGGCTTTCGTCATGACCATATTGCATGGTTAGTTTATCAACTCGCAGGTGCGCTAGAA
TTTATGCACACTCGAGGTATTTGCCATCTTGATATCAAACCGTCGAATGTTCTGGTTAGTGAAGGCGACTACGTCAAGCT
TATCGACTTTGGTGCAGCTCGTTATATCGGCGAGATTGAATCTCACGCGGAAGCGAGTTTAAGTTACGCGTCGCCACTTT
ATCTCGAGACGGGAACAACTGAGCCACAAGACGACGTTTATTCTCTTGCATTGCTTAGCGGTCACTTATTTTTAGGGGCG
ATCTTTGGTGATGCTTGGCACAAGCAATTAAAAGATCGCAAACGTCCTGCATTAATTCCGAACCATATTTGGAAGCTGCT
CAAGCAAGTGATAAATAACCCAAGAGGGCATGGCTACACAGCTATTTCTTTTGCTCAGCAACTTGCCCGTATTGATACTC
AATCCATCGACTCTCATTCTAATGCGCCCATTTTTAGTAGTTTGCGTAATGCGGATCTACTGCTGACTCATTGTAGACCT
CAAGACAAAGCGGGCTATGGCCGCTTTAAAGTGCTTGAAGCGAGCTTGGTATTGAGTGTTGTAGCTATTACGGGTAATTA
CCTTTATCAACAAAGCCAGCCAGAATGGAAAACGATTGTAAAATCGGAACCTACGATTTCTAAAACCGAAACACCGTTGG
TGAGTAATATCAAACCAGCACAAACGGCGTCTTTTTTGGCTCAACCTCCTTGGATTATTGAAAAGGCACTTAATGATATG
GAAAAGGACGTTGTGTCGACAGCACCATATCGAGAAGCTTATCAAGTACAGCAAATGAAACTATCTGCGCTGTATAAACA
AAACCAAGCACAATTAATGTCTTACCAAGCTTTGGCAGATGACTTACCAAAACAGTTGGTGGATTTACGCAAAGAGCTAG
TCTTATTACGAGAAAAACTCGTTGATGATGGTGCGTTGTTTCCATACGCAGATAAGACTCTGACTCAAGTTATGGCAGGG
TTAAACACAGCGTCAGTAAACTCGATGAAAATCTCCGCTGTTGCTGGAAGCAAAGATGAACGAATCGCCAATTTGATCTT
GGATGGTGAAGCGAAGTTGGCTGATGAAGAGATGAAAGCGGCTTGGTTATTAAATCAATCAGAGGCTTACTTTTACAGCC
AAGTGCTGCCAAACAAGGTGATGGCGAACATCAACGACTCTATTGAACAGCACGCAAAAGATCATTACTACACCAAAGCC
ATAGAAGAAGCGAAAGCCGCTAAAACGTACTTTGGAAATGCGCCAGAATTAAACAAAAAGGTGAAAGACCTGATCGTTGC
TCGCAGCGAATACATTCTGTTTAGCACTGTGACGGAGCAATCGGTGTTTGATAAACAAAAACTTCACGATTCTCTGGCTG
ACCTTGAGCGAAATGCGCCGACAAAGTTTGGTGAAATTACTGATCTGCTTGAAAGCATGGCCACAGACTCTATCGATAAA
AGTCATCAACTTTCTCGTCCTGCACGTGGTGCAATTGCAATTGAACGCGCCTTGAGAGATTACCTAGCAGAGGAGAGAAG
TTAA