Detailed information of component protein


Summary

Component ID T6CP015655
Component protein type TssA
T6SS ID (Type) T6SS01247 experimental (Type i1)
Strain Vibrio parahaemolyticus strain T9109
Replicon chromosome
Sequence Protein sequence (525 a.a.); Nucleotide sequence (1575 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PO79_RS04615
Coordinate (Strand) 224135..225709 (-)
NCBI ID 659047759
RefSeq NZ_JTGR01000038
Uniprot ID UPI0004234897
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 1e-72 247..497
ImpA_N PF06812.14 3.4e-26 10..120
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-524 MSVIEIERLLAPISDVNPVGEDARYEFCYEMMESEVKKFGSLFGETVDWSVVKTHATEVLEHYSKDLKAICYLVRALTEEFGLQGFEQGLKLLSEALNRFGVELYPSRKRGRDGAVEWLNHQFKLVSSRFAESAQSWDLVSGCISIIEEVQRQYDDIYQDSEADFFEIRSQLNALSQQATVDDQSDGAMATIEQTAPLTASQPVAVETPAQSEVQTVVAKAVPSAPKPAPVKKIVTKEVDVDTDFSSPTASKRTLKKVAEVMIHANPSEPLAYRIYRHLTWDDIDGLPDHQSNETPLSLAVSSDQQAEYRDKASQESDIDTVKRLERTLTDAPFWLTGHYFVYSMLNNLGFNDAALAVKQEVKRFVDSLEGIELLTFKNSIPFADEATLSWLSTQAATSSSAQSVVQTIVITDEDSLPMEDITLANLGEYAAELAHKLELDFSGRGQFMLHLQLIAAYQSVGLYPLCLPYLEKAWEVQQAFNLASWEPHLSSQLEDLIRKTLHQLFRNKDLLPEKYEKWKAIYD


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9960 - -


  Protein sequence: 525 a.a.    

>T6CP015655 NZ_JTGR01000038:c225709-224135 [Vibrio parahaemolyticus] [TssA]
MSVIEIERLLAPISDVNPVGEDARYEFCYEMMESEVKKFGSLFGETVDWSVVKTHATEVLEHYSKDLKAICYLVRALTEE
FGLQGFEQGLKLLSEALNRFGVELYPSRKRGRDGAVEWLNHQFKLVSSRFAESAQSWDLVSGCISIIEEVQRQYDDIYQD
SEADFFEIRSQLNALSQQATVDDQSDGAMATIEQTAPLTASQPVAVETPAQSEVQTVVAKAVPSAPKPAPVKKIVTKEVD
VDTDFSSPTASKRTLKKVAEVMIHANPSEPLAYRIYRHLTWDDIDGLPDHQSNETPLSLAVSSDQQAEYRDKASQESDID
TVKRLERTLTDAPFWLTGHYFVYSMLNNLGFNDAALAVKQEVKRFVDSLEGIELLTFKNSIPFADEATLSWLSTQAATSS
SAQSVVQTIVITDEDSLPMEDITLANLGEYAAELAHKLELDFSGRGQFMLHLQLIAAYQSVGLYPLCLPYLEKAWEVQQA
FNLASWEPHLSSQLEDLIRKTLHQLFRNKDLLPEKYEKWKAIYD*

  Nucleotide sequence: 1575 bp    

>T6CP015655 NZ_JTGR01000038:c225709-224135 [Vibrio parahaemolyticus] [TssA]
ATGTCTGTGATCGAAATTGAACGTTTACTTGCGCCTATCTCTGACGTAAATCCTGTCGGTGAAGATGCTCGTTACGAGTT
TTGTTATGAAATGATGGAATCCGAAGTGAAGAAGTTCGGATCCTTGTTTGGCGAAACGGTAGATTGGAGTGTCGTAAAAA
CGCACGCCACTGAAGTTCTTGAACACTACAGCAAAGATTTAAAAGCAATTTGTTACCTTGTTCGCGCGCTTACAGAAGAG
TTTGGTCTGCAAGGTTTCGAGCAAGGTCTAAAGCTGCTTAGTGAAGCGTTAAATCGTTTTGGCGTTGAGCTGTACCCGTC
GCGAAAACGGGGTAGAGATGGTGCGGTAGAGTGGTTGAACCATCAGTTTAAATTGGTGAGCAGCAGGTTTGCAGAAAGCG
CCCAATCATGGGATTTGGTTTCAGGTTGTATTTCGATTATCGAAGAAGTCCAACGTCAGTACGACGATATTTACCAAGAC
TCCGAAGCGGACTTCTTTGAAATTCGTAGTCAACTCAATGCGCTATCTCAACAAGCGACTGTCGATGACCAAAGCGATGG
TGCAATGGCTACCATCGAACAAACAGCTCCGCTAACGGCTTCACAGCCTGTAGCAGTAGAAACTCCGGCACAAAGTGAAG
TTCAAACCGTTGTAGCAAAAGCGGTTCCGTCGGCTCCTAAACCGGCACCAGTTAAGAAAATAGTAACAAAAGAAGTCGAT
GTCGATACGGATTTTTCATCGCCGACGGCTTCTAAACGTACACTTAAGAAAGTTGCGGAAGTTATGATTCATGCGAATCC
AAGTGAGCCGCTAGCTTACCGAATTTATCGTCACCTAACTTGGGATGATATTGATGGCCTTCCTGATCATCAAAGCAATG
AAACGCCATTGAGTTTGGCTGTGTCGTCTGATCAGCAGGCTGAGTACCGCGATAAAGCCTCTCAAGAAAGCGACATTGAT
ACAGTTAAGCGTTTGGAGCGCACGTTAACCGATGCTCCGTTTTGGCTGACGGGTCACTACTTTGTTTATTCGATGTTAAA
CAACCTAGGCTTTAATGACGCAGCGCTCGCTGTGAAGCAAGAAGTAAAGCGTTTTGTTGATTCATTAGAGGGCATTGAAC
TCCTCACATTTAAGAATTCTATACCATTTGCAGATGAAGCAACGTTGAGCTGGTTATCGACTCAAGCTGCAACTTCTTCA
AGTGCTCAATCTGTCGTTCAAACGATTGTCATCACAGATGAAGACTCACTGCCAATGGAAGATATCACCCTAGCCAACTT
AGGGGAGTATGCCGCAGAACTCGCACACAAACTCGAACTGGATTTCTCGGGACGTGGGCAGTTTATGCTGCATTTACAAT
TGATAGCAGCTTACCAGTCTGTTGGATTATACCCGTTGTGTTTGCCTTACCTTGAAAAAGCTTGGGAAGTGCAACAAGCG
TTTAATCTCGCGAGCTGGGAACCCCACTTATCGTCACAGCTAGAAGACCTGATTCGAAAAACACTGCATCAGTTATTCAG
AAACAAGGATCTTTTGCCTGAAAAGTACGAAAAGTGGAAAGCAATTTATGACTAA