Detailed information of component protein


Summary

Component ID T6CP015654
Component protein type TssB
T6SS ID (Type) T6SS01247 experimental (Type i1)
Strain Vibrio parahaemolyticus strain T9109
Replicon chromosome
Sequence Protein sequence (169 a.a.); Nucleotide sequence (507 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) PO79_RS04610
Coordinate (Strand) 223602..224108 (-)
NCBI ID WP_005480589.1
RefSeq NZ_JTGR01000038
Uniprot ID Q87PU9_VIBPA, A0A0L8TZI4_VIBPH
KEGG ID vpa:VP1402
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VipA PF05591.14 8.3e-59 6..157

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-168 MSRDGSVAPKERINIRYVPATGDTQEDVELPLSMMVVGDFTARADETPIEERTPINIDKDNFNDVLEGMSPNVKVNVENRLSDEEGAQIGVDLTFQNMKDFSPEAIAKSVPELNSLLELREALVALKGPLGNVPAFRKKIASVLQDEEARKKLLDELSIGNDQDAKEE



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9840 - -



  Protein sequence: 169 a.a.    

>T6CP015654 NZ_JTGR01000038:c224108-223602 [Vibrio parahaemolyticus] [TssB]
MSRDGSVAPKERINIRYVPATGDTQEDVELPLSMMVVGDFTARADETPIEERTPINIDKDNFNDVLEGMSPNVKVNVENR
LSDEEGAQIGVDLTFQNMKDFSPEAIAKSVPELNSLLELREALVALKGPLGNVPAFRKKIASVLQDEEARKKLLDELSIG
NDQDAKEE*

  Nucleotide sequence: 507 bp    

>T6CP015654 NZ_JTGR01000038:c224108-223602 [Vibrio parahaemolyticus] [TssB]
ATGTCACGTGACGGCTCGGTGGCTCCTAAAGAGCGAATTAATATCCGTTATGTTCCAGCAACTGGTGATACGCAAGAAGA
CGTTGAGCTGCCGCTGAGCATGATGGTGGTTGGTGACTTTACTGCACGTGCAGATGAGACGCCAATCGAAGAACGTACCC
CAATCAACATCGATAAAGACAACTTTAATGACGTGTTAGAAGGCATGTCTCCAAACGTTAAAGTAAATGTTGAAAACCGC
TTATCTGATGAAGAAGGCGCACAGATCGGTGTTGACCTAACGTTCCAAAATATGAAGGACTTCTCTCCGGAAGCGATCGC
GAAAAGTGTACCTGAACTTAACAGTCTTCTTGAGCTTCGCGAAGCATTGGTTGCACTAAAAGGTCCTCTAGGTAACGTAC
CTGCGTTCCGTAAGAAGATTGCATCGGTTCTTCAAGACGAAGAAGCAAGAAAGAAACTGTTGGATGAACTAAGCATTGGC
AACGACCAAGACGCGAAAGAAGAGTAA