Detailed information of component protein


Summary

Component ID T6CP015653
Component protein type TssC
T6SS ID (Type) T6SS01247 experimental (Type i1)
Strain Vibrio parahaemolyticus strain T9109
Replicon chromosome
Sequence Protein sequence (492 a.a.); Nucleotide sequence (1476 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PO79_RS04605
Coordinate (Strand) 222118..223593 (-)
NCBI ID 491623191
RefSeq NZ_JTGR01000038
Uniprot ID Q87PU8_VIBPA, A0A0L8TQZ4_VIBPH
KEGG ID vpa:VP1403
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 2.3e-125 68..365
VipB_2 PF18945.2 3e-45 378..489
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-491 MSAEAQAPEQEAALVESGSLLDSILNETRLKPSDEGFDVAKRGVEAFISELLSSSNTEKVDQSLVDLMISEIDQKLSKQVDAILHNEEVQAIESTWRGLKYLVDHTDFRENIQIELISAKKDEVLDDFEDAPEVVKSGLYKQIYTREYGQFGGKPVGAVICDYNMSASSPDIKLMEYMANVGAMSHAPFITSASAKFFGLDSYEELPNLKDLKSVFEGPQYTKWRGLREHEDARYLGLCTSRFMLRTPYSVEDNPIKAFDYDEHVTDSHDNYLWGNSAYAMASKISESFAKYRWCPNIIGPQSGGSVHDLPVYNFEAMGQIETKIPTEILVSDRREYELAEEGFIALTMRKGSDNAAFFSANSVQKPKVFANTPEGKQAEMNYKLGTQLPYMFIINRLAHYIKVLQREQIGSWKERSDLEIELNKWIRQYVSDQENPPAEVRGRRPLRAAKVEVSDVEGDPGWYKVSMSVRPHFKYMGASFDLSLVGKLDQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9875 - -


  Protein sequence: 492 a.a.    

>T6CP015653 NZ_JTGR01000038:c223593-222118 [Vibrio parahaemolyticus] [TssC]
MSAEAQAPEQEAALVESGSLLDSILNETRLKPSDEGFDVAKRGVEAFISELLSSSNTEKVDQSLVDLMISEIDQKLSKQV
DAILHNEEVQAIESTWRGLKYLVDHTDFRENIQIELISAKKDEVLDDFEDAPEVVKSGLYKQIYTREYGQFGGKPVGAVI
CDYNMSASSPDIKLMEYMANVGAMSHAPFITSASAKFFGLDSYEELPNLKDLKSVFEGPQYTKWRGLREHEDARYLGLCT
SRFMLRTPYSVEDNPIKAFDYDEHVTDSHDNYLWGNSAYAMASKISESFAKYRWCPNIIGPQSGGSVHDLPVYNFEAMGQ
IETKIPTEILVSDRREYELAEEGFIALTMRKGSDNAAFFSANSVQKPKVFANTPEGKQAEMNYKLGTQLPYMFIINRLAH
YIKVLQREQIGSWKERSDLEIELNKWIRQYVSDQENPPAEVRGRRPLRAAKVEVSDVEGDPGWYKVSMSVRPHFKYMGAS
FDLSLVGKLDQ*

  Nucleotide sequence: 1476 bp    

>T6CP015653 NZ_JTGR01000038:c223593-222118 [Vibrio parahaemolyticus] [TssC]
ATGTCTGCAGAAGCACAAGCTCCAGAACAAGAAGCAGCCTTAGTTGAATCAGGCTCACTTCTGGATAGCATTCTTAACGA
AACTCGTTTAAAGCCAAGTGATGAAGGTTTTGATGTTGCTAAACGTGGCGTAGAAGCATTCATTAGTGAGCTACTGAGCA
GCTCGAATACAGAGAAAGTAGACCAATCTTTGGTTGACTTAATGATCTCTGAAATTGACCAAAAACTGTCTAAGCAAGTT
GATGCGATTCTTCACAACGAAGAAGTTCAAGCGATTGAGTCAACTTGGCGTGGCCTGAAGTATCTTGTTGATCACACTGA
TTTCCGTGAAAACATTCAAATTGAACTAATTTCAGCGAAGAAAGACGAAGTTCTTGATGATTTTGAAGATGCACCGGAAG
TGGTTAAGTCTGGCCTTTACAAGCAGATCTACACTCGCGAATACGGCCAATTCGGTGGTAAACCTGTAGGTGCGGTAATC
TGTGACTACAACATGTCAGCGTCTTCTCCAGACATTAAGCTGATGGAATACATGGCAAATGTGGGCGCGATGTCTCATGC
ACCTTTCATAACGTCAGCATCGGCTAAGTTCTTTGGTCTGGATAGCTACGAAGAGCTACCAAACCTAAAAGATTTGAAGT
CTGTTTTCGAAGGTCCACAATACACGAAATGGCGTGGCTTACGTGAACACGAAGATGCTCGTTACCTAGGTCTATGTACG
TCTCGCTTTATGTTACGTACACCTTATTCTGTCGAAGATAACCCAATTAAGGCGTTTGACTACGACGAGCACGTAACAGA
TAGCCATGATAACTACCTATGGGGTAACTCAGCGTACGCGATGGCTTCTAAGATCAGTGAGTCATTTGCTAAGTACCGTT
GGTGTCCAAATATCATTGGTCCTCAAAGTGGCGGTTCGGTTCATGACTTGCCAGTTTATAACTTTGAAGCAATGGGCCAA
ATCGAAACGAAGATCCCAACAGAAATCTTGGTATCTGACCGTCGTGAATACGAGCTAGCCGAAGAGGGCTTTATCGCTCT
AACGATGCGCAAAGGTTCTGACAACGCGGCGTTCTTCTCTGCAAACTCTGTTCAAAAACCAAAAGTGTTTGCAAACACGC
CAGAAGGCAAACAAGCAGAGATGAACTACAAGCTGGGTACTCAGCTTCCATACATGTTCATTATCAACCGTCTAGCGCAC
TACATCAAAGTGCTACAACGTGAGCAAATCGGTTCATGGAAAGAGCGTTCTGACCTAGAAATCGAGTTGAACAAGTGGAT
CCGCCAATACGTTTCTGACCAAGAGAACCCACCAGCAGAAGTCCGTGGTCGTCGTCCACTGCGTGCTGCTAAGGTTGAGG
TATCAGACGTAGAAGGCGATCCAGGTTGGTACAAAGTATCAATGTCTGTACGTCCTCACTTCAAGTACATGGGCGCAAGT
TTCGACTTGTCTCTAGTTGGTAAACTAGACCAATAA