Detailed information of component protein


Summary

Component ID T6CP015650
Component protein type TssG
T6SS ID (Type) T6SS01247 experimental (Type i1)
Strain Vibrio parahaemolyticus strain T9109
Replicon chromosome
Sequence Protein sequence (333 a.a.); Nucleotide sequence (999 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PO79_RS04590
Coordinate (Strand) 218892..219890 (-)
NCBI ID 491623152
RefSeq NZ_JTGR01000038
Uniprot ID A0A0L7YXD6_VIBPH
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 2e-85 10..317
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-332 MINTLSEKSNEFSFYQAVLLLEKHYQFEPNSNFVAVGENKYFHQERIEFSVSPNLCFPKSDMEFIVHMERNGQQYSRVETNFLGLHGSSSPLPVSYTEKLTGREPDDNPVKDFFDFFHNRYTSLLYRVWKKYRYHVQYQSGATDAFSGRMLHLAGLSGVMQDCGVAELDRAKVLSYVNQLSTRTRSPKLISGIVSHYFSLPSVRIEEWVYRRVEIADSQRNKLNRANCILGQSFHLGQSIADLNGKFNLCIDDIDFETFKQFSYEGELHKTLVGLMRFILRDPMSWDLKLTVNLDSIPNNQLGNGEGNNLGQTFWLGNPTDEDVKIRVIGSI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9971 - -


  Protein sequence: 333 a.a.    

>T6CP015650 NZ_JTGR01000038:c219890-218892 [Vibrio parahaemolyticus] [TssG]
MINTLSEKSNEFSFYQAVLLLEKHYQFEPNSNFVAVGENKYFHQERIEFSVSPNLCFPKSDMEFIVHMERNGQQYSRVET
NFLGLHGSSSPLPVSYTEKLTGREPDDNPVKDFFDFFHNRYTSLLYRVWKKYRYHVQYQSGATDAFSGRMLHLAGLSGVM
QDCGVAELDRAKVLSYVNQLSTRTRSPKLISGIVSHYFSLPSVRIEEWVYRRVEIADSQRNKLNRANCILGQSFHLGQSI
ADLNGKFNLCIDDIDFETFKQFSYEGELHKTLVGLMRFILRDPMSWDLKLTVNLDSIPNNQLGNGEGNNLGQTFWLGNPT
DEDVKIRVIGSI*

  Nucleotide sequence: 999 bp    

>T6CP015650 NZ_JTGR01000038:c219890-218892 [Vibrio parahaemolyticus] [TssG]
ATGATTAATACACTTTCTGAAAAATCGAATGAGTTTAGTTTTTATCAAGCGGTTCTTTTGCTCGAGAAGCACTACCAGTT
TGAACCAAACTCTAACTTTGTCGCCGTGGGAGAGAACAAATATTTCCACCAGGAGCGAATTGAGTTCAGCGTGTCGCCTA
ATCTATGCTTCCCTAAGAGTGATATGGAATTTATCGTTCATATGGAACGAAATGGGCAGCAGTATTCACGAGTCGAGACG
AACTTCCTTGGTTTGCATGGTTCGAGCTCTCCATTGCCTGTCTCTTATACGGAGAAACTTACTGGGCGTGAACCTGATGA
CAACCCGGTAAAAGATTTCTTTGATTTCTTCCATAATCGCTACACCAGTTTACTCTATCGTGTCTGGAAGAAGTACCGTT
ATCATGTACAGTACCAAAGTGGTGCGACAGACGCTTTTTCTGGACGGATGCTGCACTTAGCTGGTTTATCAGGTGTTATG
CAAGATTGTGGTGTTGCAGAGTTAGACCGTGCAAAAGTCCTGTCTTACGTTAATCAACTGTCGACACGTACACGTTCTCC
TAAGCTAATTTCAGGTATCGTTTCACATTATTTCTCACTTCCTAGCGTTCGCATCGAAGAATGGGTTTATCGCCGTGTGG
AGATTGCAGACAGTCAACGAAATAAACTCAATCGAGCCAATTGCATATTAGGTCAAAGCTTTCATTTAGGGCAGAGTATC
GCAGATTTAAATGGTAAGTTTAATCTTTGCATTGATGACATTGACTTCGAGACATTTAAGCAGTTTTCTTACGAAGGTGA
GTTGCATAAAACGTTGGTTGGTTTAATGAGATTCATCTTGCGTGACCCGATGTCTTGGGATCTCAAACTGACAGTTAATC
TCGACAGTATTCCAAATAACCAACTTGGCAATGGAGAAGGGAACAACTTAGGGCAGACATTTTGGTTAGGCAATCCCACA
GATGAAGATGTGAAGATCAGAGTAATTGGTAGCATTTAG