Detailed information of component protein


Summary

Component ID T6CP015647
Component protein type TagH
T6SS ID (Type) T6SS01247 experimental (Type i1)
Strain Vibrio parahaemolyticus strain T9109
Replicon chromosome
Sequence Protein sequence (505 a.a.); Nucleotide sequence (1515 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PO79_RS04565
Coordinate (Strand) 210994..212508 (-)
NCBI ID 835942998
RefSeq NZ_JTGR01000038
Uniprot ID UPI00054274DA
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
FHA PF00498.28 1.5e-15 31..97
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-504 MQTHQLVLFISKCPEEYTGAKHIEMPEGGGSVGRAPSCTLSLTDHNRFISGTHCLISVYGDTFYISDVSTNGTMVNGNKILKNQPISIVDGDVVSLGQYEIGVALEHISAVQDIAADIAPERVSNDPLVNLGEAVVEEEEKVGALEDLFMETKQDGVNTDDPIAHLKFSMQREDDYLIRDVEKPEPAPAKTIENTRQVVDDSFSIHSEFDIPNLIPEDWLGGVATSKESVEPATEQAKQAAFIPEDFAHTKPVSPQASVVQPDVNQPQQPQYEAPLNHATSNVTQRAEPVSQKWEEVTQAFVPSAQPTQPETKAKEAQLGFVSNESLAIESAAHSSDIGKAFYEGLGISNPDLISNEALLFKQMGACLRLCIDNLQKDLHEVESLKGEQGLSEADSNLAELMLTLNSQNLLSPNELVEQMLDELNDHQIIFNKALNELLIEQSETNDPVTFANDVASKSMFTTKSKLWGEYLEFYANNRRQMNETSLKGLIKKNYTKAIKGSHA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9449 - -


  Protein sequence: 505 a.a.    

>T6CP015647 NZ_JTGR01000038:c212508-210994 [Vibrio parahaemolyticus] [TagH]
MQTHQLVLFISKCPEEYTGAKHIEMPEGGGSVGRAPSCTLSLTDHNRFISGTHCLISVYGDTFYISDVSTNGTMVNGNKI
LKNQPISIVDGDVVSLGQYEIGVALEHISAVQDIAADIAPERVSNDPLVNLGEAVVEEEEKVGALEDLFMETKQDGVNTD
DPIAHLKFSMQREDDYLIRDVEKPEPAPAKTIENTRQVVDDSFSIHSEFDIPNLIPEDWLGGVATSKESVEPATEQAKQA
AFIPEDFAHTKPVSPQASVVQPDVNQPQQPQYEAPLNHATSNVTQRAEPVSQKWEEVTQAFVPSAQPTQPETKAKEAQLG
FVSNESLAIESAAHSSDIGKAFYEGLGISNPDLISNEALLFKQMGACLRLCIDNLQKDLHEVESLKGEQGLSEADSNLAE
LMLTLNSQNLLSPNELVEQMLDELNDHQIIFNKALNELLIEQSETNDPVTFANDVASKSMFTTKSKLWGEYLEFYANNRR
QMNETSLKGLIKKNYTKAIKGSHA*

  Nucleotide sequence: 1515 bp    

>T6CP015647 NZ_JTGR01000038:c212508-210994 [Vibrio parahaemolyticus] [TagH]
ATGCAAACACATCAGCTAGTCCTATTTATTTCTAAATGCCCAGAGGAATATACGGGCGCAAAGCATATTGAAATGCCAGA
AGGTGGTGGCTCAGTTGGACGAGCGCCTAGCTGCACTCTGTCTTTAACGGACCATAACCGTTTTATCTCTGGTACACACT
GTTTGATAAGTGTATACGGTGACACTTTCTACATTAGCGATGTGTCGACAAATGGCACTATGGTTAATGGTAATAAGATT
CTAAAGAATCAACCGATATCTATTGTTGACGGTGACGTTGTTTCATTAGGGCAGTACGAGATTGGCGTTGCATTAGAGCA
TATATCCGCTGTTCAAGATATTGCCGCCGATATTGCCCCAGAAAGAGTATCGAATGATCCACTCGTCAATCTCGGTGAGG
CGGTTGTAGAAGAGGAAGAAAAAGTCGGTGCATTAGAAGACTTATTCATGGAGACCAAGCAAGACGGTGTTAATACTGAC
GATCCTATTGCGCATCTAAAGTTTTCGATGCAGCGTGAAGACGACTATCTTATCCGCGATGTTGAAAAGCCTGAGCCTGC
ACCGGCTAAGACAATCGAAAATACGCGACAAGTCGTTGATGACAGTTTCAGTATCCATTCCGAATTCGATATTCCAAATT
TAATCCCTGAAGATTGGCTAGGAGGCGTTGCCACGAGTAAAGAATCTGTTGAACCAGCGACAGAGCAAGCTAAGCAAGCC
GCGTTCATTCCAGAAGATTTTGCGCACACGAAGCCCGTTTCGCCTCAGGCTAGTGTGGTTCAACCAGACGTTAACCAACC
TCAACAGCCTCAATATGAAGCGCCACTTAATCATGCGACGTCAAATGTTACTCAAAGAGCAGAGCCTGTTAGCCAGAAAT
GGGAAGAGGTAACACAAGCCTTTGTTCCATCAGCACAACCTACTCAGCCAGAAACGAAAGCGAAAGAGGCCCAACTAGGT
TTTGTAAGCAACGAGTCTCTAGCGATTGAGAGTGCGGCTCATTCTTCAGATATCGGTAAAGCGTTTTATGAAGGCTTGGG
TATTAGTAACCCTGATCTGATCAGTAACGAAGCTCTGCTGTTTAAACAAATGGGGGCATGTCTTCGTTTGTGTATCGATA
ACTTGCAAAAAGACTTGCATGAAGTTGAGTCACTTAAAGGTGAACAGGGTTTAAGCGAAGCGGATTCAAATTTAGCGGAA
CTGATGTTAACGCTAAATAGTCAGAACTTGCTGTCTCCGAATGAATTGGTGGAGCAAATGTTGGATGAGCTCAACGATCA
TCAAATTATTTTTAACAAGGCACTCAATGAGTTGCTAATTGAACAATCAGAGACGAATGACCCTGTCACGTTTGCAAACG
ACGTTGCAAGTAAATCCATGTTCACCACCAAATCAAAGTTATGGGGTGAGTATCTTGAGTTCTACGCCAATAACCGTCGT
CAAATGAATGAGACGTCATTGAAAGGTTTGATCAAGAAAAACTACACCAAAGCGATTAAGGGAAGCCATGCGTAG