Detailed information of component protein


Summary

Component ID T6CP015645
Component protein type TssK
T6SS ID (Type) T6SS01247 experimental (Type i1)
Strain Vibrio parahaemolyticus strain T9109
Replicon chromosome
Sequence Protein sequence (442 a.a.); Nucleotide sequence (1326 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PO79_RS04555
Coordinate (Strand) 209164..210489 (-)
NCBI ID 491623174
RefSeq NZ_JTGR01000038
Uniprot ID Q87PT8_VIBPA, A0A0L8S0C3_VIBPH
KEGG ID vpa:VP1413
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.7e-136 19..439
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-441 MSLYNPVVWQDGMFMKPQHFQQLDRSQSKLSSMLSANASPLHWGIKRLEINSQLLALGKIGITRAEGILQDRTPFELPLLAELPEVKDVDPSIADKVVYLCCPLPSERSELFGTKKDGARYTLESQEAVDACYDSEDMANIVVGKLNFCLMYDHEDKSAYTSIPILKISEVKPDGSVILDESFIPTCIDIHASTVLNKFATEFASMLKHRAESIVQRLGVVDQQGVSSVSDFMLLQALNRYEPLFWHFASAEGVHPESFYRILLQAEGELSTLCSASRRPIEFTKYNHGDLTSCLSRTLDSAKMTLSVMSEQRAIPLTLKDQNYGIRTAAIPDSKIIDTTTFILAVKADVTLDVLHTQFVSQTKIGSIDNIRDLINLQLPGIEIKPMPVVPRALPYHAGYTYFELDKTGEEWAALKNTAAIAVHVAGDFANLSLQLWAVRL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9889 - -


  Protein sequence: 442 a.a.    

>T6CP015645 NZ_JTGR01000038:c210489-209164 [Vibrio parahaemolyticus] [TssK]
MSLYNPVVWQDGMFMKPQHFQQLDRSQSKLSSMLSANASPLHWGIKRLEINSQLLALGKIGITRAEGILQDRTPFELPLL
AELPEVKDVDPSIADKVVYLCCPLPSERSELFGTKKDGARYTLESQEAVDACYDSEDMANIVVGKLNFCLMYDHEDKSAY
TSIPILKISEVKPDGSVILDESFIPTCIDIHASTVLNKFATEFASMLKHRAESIVQRLGVVDQQGVSSVSDFMLLQALNR
YEPLFWHFASAEGVHPESFYRILLQAEGELSTLCSASRRPIEFTKYNHGDLTSCLSRTLDSAKMTLSVMSEQRAIPLTLK
DQNYGIRTAAIPDSKIIDTTTFILAVKADVTLDVLHTQFVSQTKIGSIDNIRDLINLQLPGIEIKPMPVVPRALPYHAGY
TYFELDKTGEEWAALKNTAAIAVHVAGDFANLSLQLWAVRL*

  Nucleotide sequence: 1326 bp    

>T6CP015645 NZ_JTGR01000038:c210489-209164 [Vibrio parahaemolyticus] [TssK]
ATGTCTTTATACAATCCAGTTGTTTGGCAAGATGGAATGTTCATGAAGCCGCAGCACTTTCAGCAACTCGATCGTTCACA
AAGTAAACTGTCGAGCATGCTGAGCGCAAATGCATCACCTTTGCATTGGGGTATTAAGCGCTTAGAGATTAACTCGCAAC
TACTGGCGTTGGGCAAAATTGGTATCACTCGTGCTGAAGGTATTCTTCAAGACAGAACACCATTTGAGCTGCCGCTGCTG
GCTGAACTTCCAGAAGTGAAAGACGTTGATCCTTCGATTGCTGACAAAGTGGTTTATCTTTGTTGTCCGTTACCTTCTGA
GCGCTCTGAACTATTCGGCACCAAGAAAGACGGCGCACGTTACACGCTGGAATCTCAAGAGGCGGTTGACGCTTGTTATG
ATTCAGAAGACATGGCAAATATCGTAGTCGGTAAGCTTAACTTCTGCTTGATGTATGACCATGAAGATAAGAGTGCTTAC
ACATCAATTCCAATTCTGAAGATCTCAGAAGTGAAGCCAGACGGCAGTGTTATCTTGGATGAAAGCTTTATCCCGACTTG
TATCGATATTCATGCCTCTACCGTGCTAAACAAGTTCGCAACCGAGTTTGCCTCTATGCTGAAACACCGTGCAGAATCCA
TCGTTCAGCGCTTAGGCGTGGTTGACCAGCAAGGCGTATCTTCAGTTTCTGATTTCATGCTGCTGCAAGCTCTAAACCGA
TACGAGCCGCTATTCTGGCACTTTGCGAGCGCAGAAGGGGTTCATCCTGAATCGTTTTATCGCATTCTTCTTCAAGCGGA
AGGTGAGCTTTCGACTTTGTGTTCAGCATCTCGTCGACCAATCGAGTTCACCAAGTACAACCATGGCGACCTAACCAGCT
GTCTATCGCGTACATTGGATAGTGCGAAGATGACACTAAGTGTGATGTCTGAGCAGCGTGCAATCCCACTGACGTTGAAA
GACCAAAACTACGGTATTAGAACGGCAGCGATTCCAGACAGTAAGATTATCGACACCACGACCTTTATTCTTGCGGTTAA
AGCCGACGTTACTTTGGATGTTCTTCACACCCAGTTTGTTAGTCAAACGAAGATCGGTTCTATCGATAACATTCGTGACT
TGATTAACCTGCAACTGCCGGGCATCGAGATTAAACCAATGCCAGTCGTACCTCGCGCATTGCCTTACCACGCAGGTTAC
ACCTACTTCGAACTGGATAAGACTGGCGAAGAGTGGGCAGCACTGAAAAACACGGCTGCAATTGCGGTTCACGTAGCCGG
TGACTTTGCTAACTTGTCATTGCAACTGTGGGCCGTTCGTCTATGA