Detailed information of component protein
Summary
| Component ID | T6CP015644 |
| Component protein type | TssL |
| T6SS ID (Type) | T6SS01247  (Type i1) |
| Strain | Vibrio parahaemolyticus strain T9109 |
| Replicon | chromosome |
| Sequence | Protein sequence (264 a.a.); Nucleotide sequence (792 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PO79_RS04550 |
| Coordinate (Strand) | 208376..209167 (-) |
| NCBI ID | 491591893 |
| RefSeq | NZ_JTGR01000038 |
| Uniprot ID | K5UZJ5_9VIBR |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| DotU | PF09850.11 | 4.6e-51 | 47..246 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-230 | MSYAETDVTVVLFQPEPGKPMEVMPAPDLSRNIAVQDLNIENMGINPLVDQFSWLIASLSCMSSIPWLDDPMPFREQVAREIRKGERKLNEMELDRASILVIRYCLCAAIDESVCRQEWGANSHWSQNSLLSEFHNETSGGDKFFVILERLKADPRKYRHVIEFLYLLLQLGFQGKYGREERGNEKLAEIGNTIYRLVRDERLAEQEKVSLVNLKAKYLKKPLKRVISPK |
| Transmembrane helix | 231-253 | LILGISAITFAIMYAATYIVIDL |
| Outside | 254-263 | KFQQLLEVYR |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9949 | - | - |
Protein sequence: 264 a.a.
>T6CP015644 NZ_JTGR01000038:c209167-208376 [Vibrio parahaemolyticus] [TssL]
MSYAETDVTVVLFQPEPGKPMEVMPAPDLSRNIAVQDLNIENMGINPLVDQFSWLIASLSCMSSIPWLDDPMPFREQVAR
EIRKGERKLNEMELDRASILVIRYCLCAAIDESVCRQEWGANSHWSQNSLLSEFHNETSGGDKFFVILERLKADPRKYRH
VIEFLYLLLQLGFQGKYGREERGNEKLAEIGNTIYRLVRDERLAEQEKVSLVNLKAKYLKKPLKRVISPKLILGISAITF
AIMYAATYIVIDLKFQQLLEVYR*
MSYAETDVTVVLFQPEPGKPMEVMPAPDLSRNIAVQDLNIENMGINPLVDQFSWLIASLSCMSSIPWLDDPMPFREQVAR
EIRKGERKLNEMELDRASILVIRYCLCAAIDESVCRQEWGANSHWSQNSLLSEFHNETSGGDKFFVILERLKADPRKYRH
VIEFLYLLLQLGFQGKYGREERGNEKLAEIGNTIYRLVRDERLAEQEKVSLVNLKAKYLKKPLKRVISPKLILGISAITF
AIMYAATYIVIDLKFQQLLEVYR*
Nucleotide sequence: 792 bp
>T6CP015644 NZ_JTGR01000038:c209167-208376 [Vibrio parahaemolyticus] [TssL]
ATGAGTTACGCAGAAACCGACGTCACTGTAGTTTTATTCCAACCAGAGCCTGGCAAACCGATGGAGGTGATGCCAGCGCC
TGACTTGTCTCGTAATATCGCGGTACAAGACCTAAACATCGAAAACATGGGCATCAACCCTTTGGTCGACCAGTTTTCAT
GGTTGATCGCCAGCTTGTCTTGTATGTCTTCGATTCCTTGGCTTGATGACCCAATGCCATTTCGTGAACAAGTGGCTCGC
GAGATAAGAAAAGGCGAACGTAAGCTCAACGAAATGGAATTGGATCGCGCATCTATTTTGGTCATCCGATATTGTTTGTG
TGCTGCGATTGATGAATCGGTTTGCCGACAAGAGTGGGGCGCTAACAGCCATTGGAGCCAGAACAGTTTGTTGTCCGAGT
TCCACAATGAAACATCTGGCGGCGATAAGTTCTTCGTTATTCTCGAGCGTTTAAAAGCAGACCCACGCAAATACCGTCAC
GTCATCGAGTTTCTCTATTTGCTGCTTCAACTTGGCTTTCAGGGAAAGTACGGCCGTGAAGAGCGCGGTAACGAAAAGCT
CGCAGAAATTGGTAATACCATTTATCGCTTAGTACGTGATGAACGCTTAGCAGAGCAAGAGAAAGTCTCTCTCGTTAACC
TTAAGGCCAAATACCTTAAGAAGCCGTTAAAAAGGGTGATTTCACCCAAACTGATTTTAGGCATCAGTGCGATTACCTTC
GCAATCATGTATGCCGCGACTTACATCGTCATAGATTTAAAGTTTCAGCAATTACTTGAAGTGTATCGATAA
ATGAGTTACGCAGAAACCGACGTCACTGTAGTTTTATTCCAACCAGAGCCTGGCAAACCGATGGAGGTGATGCCAGCGCC
TGACTTGTCTCGTAATATCGCGGTACAAGACCTAAACATCGAAAACATGGGCATCAACCCTTTGGTCGACCAGTTTTCAT
GGTTGATCGCCAGCTTGTCTTGTATGTCTTCGATTCCTTGGCTTGATGACCCAATGCCATTTCGTGAACAAGTGGCTCGC
GAGATAAGAAAAGGCGAACGTAAGCTCAACGAAATGGAATTGGATCGCGCATCTATTTTGGTCATCCGATATTGTTTGTG
TGCTGCGATTGATGAATCGGTTTGCCGACAAGAGTGGGGCGCTAACAGCCATTGGAGCCAGAACAGTTTGTTGTCCGAGT
TCCACAATGAAACATCTGGCGGCGATAAGTTCTTCGTTATTCTCGAGCGTTTAAAAGCAGACCCACGCAAATACCGTCAC
GTCATCGAGTTTCTCTATTTGCTGCTTCAACTTGGCTTTCAGGGAAAGTACGGCCGTGAAGAGCGCGGTAACGAAAAGCT
CGCAGAAATTGGTAATACCATTTATCGCTTAGTACGTGATGAACGCTTAGCAGAGCAAGAGAAAGTCTCTCTCGTTAACC
TTAAGGCCAAATACCTTAAGAAGCCGTTAAAAAGGGTGATTTCACCCAAACTGATTTTAGGCATCAGTGCGATTACCTTC
GCAATCATGTATGCCGCGACTTACATCGTCATAGATTTAAAGTTTCAGCAATTACTTGAAGTGTATCGATAA