Detailed information of component protein


Summary

Component ID T6CP015643
Component protein type PAAR
T6SS ID (Type) T6SS01247 experimental (Type i1)
Strain Vibrio parahaemolyticus strain T9109
Replicon chromosome
Sequence Protein sequence (508 a.a.); Nucleotide sequence (1524 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PO79_RS04545
Coordinate (Strand) 206703..208226 (-)
NCBI ID 1159843676
RefSeq NZ_JTGR01000038
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DUF4150 PF13665.8 4.3e-35 22..127
SpaA PF17802.3 4.9e-05 157..198
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-507 MGVTVGANGLSIVHKGSGGEANATLPDVCLTKVGKPIVPIPYGNNAKSADLAGGTTTISMDGGNSVAIKGSTFSKSTGDAGGDKKGVASGTIEAEAKFISASPTVKFEGKGVCRLSDQMTMNKANTMCLGGAQNPSVSVTEEQEGTYTVDLYLSYSDGEPVQGATYTLTDQSGAVFEGTLDNNGKASVGGVAPGEFAIEYGEDSRDFMPNVPTKTNPNFNPSANAQLIIEETKKGEVGFWENAWTRMSGAASWIWGVILGDFNDDASVEQIIANTALTMIPVVDQAADVRDLSANIMTLLSEEERDKPENWLALSLTLVGCVPTFGSAVKGTCKVALKGGKGTSKDTLLAVLRGMGKGDPEKFLRTLDWVNYAKQTSQIVSDVLKPCIEVATELASYANRMGADELGAYFLKLADEVKIIDKMVPDKLKEAMGEFDKLFARILGKGEKTYPAKVKHNTGESAQSGKNSAKANEEKDKKPVRCKICKRVAGKKEGECADALRTKGKNK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.7834 - -


  Protein sequence: 508 a.a.    

>T6CP015643 NZ_JTGR01000038:c208226-206703 [Vibrio parahaemolyticus] [PAAR]
MGVTVGANGLSIVHKGSGGEANATLPDVCLTKVGKPIVPIPYGNNAKSADLAGGTTTISMDGGNSVAIKGSTFSKSTGDA
GGDKKGVASGTIEAEAKFISASPTVKFEGKGVCRLSDQMTMNKANTMCLGGAQNPSVSVTEEQEGTYTVDLYLSYSDGEP
VQGATYTLTDQSGAVFEGTLDNNGKASVGGVAPGEFAIEYGEDSRDFMPNVPTKTNPNFNPSANAQLIIEETKKGEVGFW
ENAWTRMSGAASWIWGVILGDFNDDASVEQIIANTALTMIPVVDQAADVRDLSANIMTLLSEEERDKPENWLALSLTLVG
CVPTFGSAVKGTCKVALKGGKGTSKDTLLAVLRGMGKGDPEKFLRTLDWVNYAKQTSQIVSDVLKPCIEVATELASYANR
MGADELGAYFLKLADEVKIIDKMVPDKLKEAMGEFDKLFARILGKGEKTYPAKVKHNTGESAQSGKNSAKANEEKDKKPV
RCKICKRVAGKKEGECADALRTKGKNK*

  Nucleotide sequence: 1524 bp    

>T6CP015643 NZ_JTGR01000038:c208226-206703 [Vibrio parahaemolyticus] [PAAR]
ATGGGCGTAACAGTTGGTGCAAATGGACTTTCGATAGTTCATAAAGGCTCAGGTGGTGAAGCGAATGCAACGCTCCCAGA
TGTTTGTTTAACGAAGGTCGGCAAGCCGATCGTTCCTATCCCTTATGGCAACAATGCTAAATCTGCAGACCTTGCTGGTG
GCACTACGACTATCTCTATGGATGGTGGCAACAGTGTCGCGATCAAAGGCAGTACCTTCTCAAAAAGTACCGGTGATGCG
GGTGGCGATAAAAAAGGCGTCGCATCCGGCACGATAGAAGCCGAAGCAAAATTCATTTCAGCCTCACCAACGGTTAAGTT
TGAAGGTAAGGGCGTATGTCGCCTGTCCGATCAAATGACCATGAACAAAGCCAACACCATGTGTTTGGGCGGCGCTCAAA
ACCCATCGGTTTCTGTTACGGAAGAGCAGGAAGGGACGTATACGGTTGATTTGTACCTCTCTTACTCAGACGGTGAGCCC
GTTCAAGGCGCGACTTACACTCTAACCGACCAATCTGGCGCCGTATTTGAAGGAACATTAGACAACAACGGTAAGGCTTC
TGTTGGTGGCGTTGCTCCGGGTGAGTTTGCCATAGAGTACGGTGAGGACAGTCGCGACTTTATGCCGAATGTCCCAACTA
AGACCAACCCAAACTTCAATCCAAGTGCGAACGCTCAACTGATCATTGAAGAAACAAAGAAAGGTGAAGTTGGTTTCTGG
GAAAATGCTTGGACGCGAATGTCTGGTGCGGCCAGTTGGATTTGGGGTGTGATTCTTGGTGATTTCAACGATGATGCTTC
TGTAGAGCAGATCATCGCCAATACAGCGCTGACGATGATTCCTGTCGTAGACCAAGCCGCTGACGTGCGCGATTTATCTG
CAAACATTATGACTTTGTTGAGTGAAGAAGAACGTGATAAGCCCGAAAACTGGTTAGCACTTTCACTTACCCTTGTCGGC
TGCGTTCCTACATTTGGTAGTGCAGTCAAAGGTACGTGTAAAGTTGCGCTAAAAGGCGGCAAAGGAACATCAAAAGATAC
TTTGCTAGCCGTTTTAAGAGGCATGGGTAAAGGCGATCCAGAAAAATTCTTGCGTACATTAGATTGGGTGAATTACGCCA
AACAAACCAGCCAGATTGTTAGCGATGTTCTAAAACCTTGTATTGAAGTGGCAACCGAGTTGGCTTCATACGCAAACAGA
ATGGGCGCAGATGAGCTCGGTGCGTATTTCTTAAAGTTAGCGGATGAGGTAAAAATCATCGATAAGATGGTGCCGGACAA
ACTAAAAGAAGCGATGGGCGAGTTTGATAAGCTTTTTGCTCGCATCTTAGGTAAGGGTGAAAAAACATACCCAGCAAAAG
TAAAACATAATACCGGTGAGTCTGCTCAGTCAGGAAAGAACTCTGCAAAGGCAAATGAAGAAAAAGATAAAAAGCCTGTT
AGGTGTAAGATTTGTAAAAGAGTTGCTGGCAAAAAAGAGGGAGAGTGCGCCGATGCTCTAAGAACAAAAGGGAAGAACAA
ATAG