Detailed information of component protein


Summary

Component ID T6CP015597
Component protein type TssI
T6SS ID (Type) T6SS01243 experimental (Type i5)
Strain Agrobacterium fabrum strain 12D13
Replicon chromosome
Sequence Protein sequence (755 a.a.); Nucleotide sequence (2265 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) At12D13_RS20980
Coordinate (Strand) 1442323..1444587 (+)
NCBI ID WP_121691720.1
RefSeq NZ_CP033035
Uniprot ID UPI000EF5906C
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 4.5e-74 36..346
Phage_base_V PF04717.14 2.9e-12 400..467
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-754 MNDQPSVSDFVQASRVLKVSSPLGEDQLLPERLTVEEGVSQLFDIRLTVRAKKEAVKPEELIGRLVDVSIEISQGDGDGGGVRRPFNGLVTELHEGPPITRGMRSYALTIRPQMWLLSRRSDCRIWMDKTVVEIVETLFSEHGIPAPDTSGIISPPPAQHYSVQFNETDLDYLTRRFEEDGLFYWFSHEDGSHKLHVADSASGWLGPSPSAKGEGRVRLAQGSSDRNHINDWARRFSYVSGQRAGADWNFETPGMVPGTMTPSLVQMPDATKRELYEYPARIKTVEEAERAQKLRTQSIEADHDRVFGSSTTRILEAGRRFTPFEVAHPEHAYEEHVIIRASHSIVDLSYETNSNEPEYRNHFEAIPARVPLTPHRSTKRPRIEGTQVAIVAGPEGEEIHPDQYGRIKLWFPWDRKAKKDGTDTCWVRVSQAWGGGTWGAQVIPRIGMEVMVAFVDGDPDKPLVIGVVNNPANSVPYDLPANKTRMVLRSNSHKGDGFNEITFEDEAGKENQFFHAQKDQTTRVLNDRTKRIDRHEVASVGGNRAVEVSGNQKHEIGGSVNTVVGGTGPMAMMAMAGVQALSGQTAGLLSQAAQIAGGGGPGVAAFATTLASSALGFLGAGGLSSREGVVSGPSPRADAGTALAGSGTGVGSDASGLFPLPGIMNTIVSTFKSDSVGVARAEQIGVSKVTNVGQTSLESVGKFKKIAVGEEFVIECGDSKFIMKANGEVIILGKTFNFVATDHFQLRGKPIDLN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9940 - -


  Protein sequence: 755 a.a.    

>T6CP015597 NZ_CP033035:1442323-1444587 [Agrobacterium fabrum] [TssI]
MNDQPSVSDFVQASRVLKVSSPLGEDQLLPERLTVEEGVSQLFDIRLTVRAKKEAVKPEELIGRLVDVSIEISQGDGDGG
GVRRPFNGLVTELHEGPPITRGMRSYALTIRPQMWLLSRRSDCRIWMDKTVVEIVETLFSEHGIPAPDTSGIISPPPAQH
YSVQFNETDLDYLTRRFEEDGLFYWFSHEDGSHKLHVADSASGWLGPSPSAKGEGRVRLAQGSSDRNHINDWARRFSYVS
GQRAGADWNFETPGMVPGTMTPSLVQMPDATKRELYEYPARIKTVEEAERAQKLRTQSIEADHDRVFGSSTTRILEAGRR
FTPFEVAHPEHAYEEHVIIRASHSIVDLSYETNSNEPEYRNHFEAIPARVPLTPHRSTKRPRIEGTQVAIVAGPEGEEIH
PDQYGRIKLWFPWDRKAKKDGTDTCWVRVSQAWGGGTWGAQVIPRIGMEVMVAFVDGDPDKPLVIGVVNNPANSVPYDLP
ANKTRMVLRSNSHKGDGFNEITFEDEAGKENQFFHAQKDQTTRVLNDRTKRIDRHEVASVGGNRAVEVSGNQKHEIGGSV
NTVVGGTGPMAMMAMAGVQALSGQTAGLLSQAAQIAGGGGPGVAAFATTLASSALGFLGAGGLSSREGVVSGPSPRADAG
TALAGSGTGVGSDASGLFPLPGIMNTIVSTFKSDSVGVARAEQIGVSKVTNVGQTSLESVGKFKKIAVGEEFVIECGDSK
FIMKANGEVIILGKTFNFVATDHFQLRGKPIDLN*

  Nucleotide sequence: 2265 bp    

>T6CP015597 NZ_CP033035:1442323-1444587 [Agrobacterium fabrum] [TssI]
ATGAACGACCAGCCTTCGGTTTCTGATTTCGTTCAGGCGAGCCGTGTTCTGAAAGTGTCTTCGCCTTTGGGCGAGGACCA
GCTTCTGCCGGAGCGCCTGACGGTCGAGGAGGGCGTGTCGCAGCTTTTCGACATCCGCCTGACGGTGCGGGCCAAAAAGG
AAGCGGTGAAGCCCGAGGAACTGATCGGACGGCTGGTCGATGTCTCGATCGAGATAAGCCAGGGCGATGGTGATGGCGGC
GGTGTTCGCCGGCCCTTCAACGGCCTGGTGACGGAATTGCACGAAGGACCGCCGATTACCCGTGGCATGCGCTCCTATGC
GCTGACCATCCGGCCGCAGATGTGGCTGCTGTCGCGCCGGTCCGATTGCCGCATCTGGATGGACAAGACGGTGGTCGAGA
TTGTCGAGACGCTGTTTTCCGAACACGGCATTCCCGCCCCAGATACATCCGGCATCATCTCACCGCCGCCTGCGCAGCAC
TACAGCGTTCAGTTTAACGAGACGGATCTCGATTATCTCACTCGCCGTTTCGAAGAGGACGGCCTGTTTTACTGGTTCAG
CCACGAGGACGGTTCCCACAAGCTGCATGTGGCCGATAGCGCCAGCGGCTGGCTCGGGCCGTCACCGTCCGCTAAGGGCG
AGGGCCGGGTGCGTCTGGCGCAGGGCTCGTCGGACCGTAACCACATCAATGACTGGGCGCGGCGGTTTTCCTATGTCTCC
GGCCAGCGGGCGGGTGCGGACTGGAATTTCGAGACACCGGGCATGGTGCCGGGCACGATGACGCCGTCACTGGTGCAGAT
GCCGGATGCGACGAAGCGCGAGCTTTATGAATATCCGGCCCGCATCAAAACGGTGGAAGAAGCCGAGCGAGCGCAAAAGC
TGCGCACCCAGTCGATAGAGGCCGATCATGACCGGGTGTTCGGCTCGTCGACCACGCGTATTCTGGAAGCGGGCCGCCGC
TTTACGCCTTTCGAAGTTGCCCATCCCGAGCATGCCTATGAGGAGCATGTGATCATCAGGGCAAGCCACAGCATCGTTGA
TCTCTCCTATGAGACAAACAGCAACGAACCGGAGTACCGCAATCACTTCGAGGCAATTCCGGCCCGCGTGCCGCTGACGC
CGCACCGGTCAACCAAACGTCCGCGCATCGAAGGCACGCAGGTGGCAATCGTCGCCGGCCCCGAAGGCGAAGAAATCCAT
CCGGATCAATATGGCCGCATCAAGCTGTGGTTCCCATGGGACCGCAAGGCGAAGAAGGATGGCACGGATACGTGCTGGGT
GCGGGTCAGCCAGGCATGGGGCGGCGGCACATGGGGTGCGCAGGTCATTCCGCGCATCGGCATGGAAGTGATGGTCGCCT
TTGTCGATGGCGACCCGGACAAGCCGTTGGTCATCGGCGTGGTCAACAATCCGGCCAATTCCGTGCCTTACGACCTGCCG
GCCAACAAGACGCGCATGGTGCTGCGCTCGAACAGCCACAAGGGTGACGGTTTCAACGAAATCACCTTCGAAGATGAGGC
CGGCAAGGAAAACCAGTTCTTCCACGCCCAGAAGGACCAGACGACGCGGGTATTGAATGACCGGACCAAGCGCATCGACC
GGCACGAGGTCGCCTCGGTTGGTGGCAACCGCGCCGTCGAGGTTTCCGGCAACCAGAAACACGAGATCGGTGGTTCGGTG
AATACTGTCGTCGGCGGAACGGGACCGATGGCGATGATGGCGATGGCAGGTGTACAGGCGCTGTCCGGACAGACGGCTGG
CCTGCTTTCACAGGCAGCCCAGATCGCCGGCGGTGGTGGTCCTGGCGTCGCGGCCTTTGCCACCACGCTCGCCTCATCCG
CACTCGGCTTCCTTGGTGCGGGCGGGCTTTCCTCACGTGAGGGGGTCGTTTCCGGCCCAAGCCCGCGGGCGGATGCGGGT
ACGGCTCTTGCGGGTTCTGGAACGGGTGTCGGTTCCGATGCCTCGGGCCTCTTTCCGCTGCCGGGTATCATGAACACGAT
CGTCAGTACGTTTAAATCCGATAGCGTCGGTGTGGCGCGGGCGGAACAGATCGGGGTGAGCAAGGTTACGAATGTCGGCC
AGACGTCGCTGGAAAGCGTCGGAAAATTCAAGAAGATTGCCGTCGGTGAAGAGTTTGTCATCGAATGCGGTGATTCAAAG
TTCATCATGAAGGCGAATGGCGAGGTCATCATTCTTGGCAAGACATTCAACTTCGTGGCGACTGATCATTTCCAGCTTCG
CGGCAAGCCGATCGATCTGAACTGA