Detailed information of component protein
Summary
| Component ID | T6CP015595 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS01243  (Type i5) |
| Strain | Agrobacterium fabrum strain 12D13 |
| Replicon | chromosome |
| Sequence | Protein sequence (159 a.a.); Nucleotide sequence (477 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | At12D13_RS20965 |
| Coordinate (Strand) | 1440824..1441300 (+) |
| NCBI ID | WP_003504561.1 |
| RefSeq | NZ_CP033035 |
| Uniprot ID | A0A2W5FF79_9HYPH, A0A1S9EUT1_9HYPH, A0A1S7QKJ0_RHIRD, A0A1S7S980_RHIRD, A0A1S7U5K7_9HYPH, A0A1S7QJJ5_9HYPH, A0A1S7REK6_9HYPH, A0A0X6ZNV9_9HYPH, A0A1G5HNE2_9HYPH, A0A7Z1S8Q1_9HYPH, A9CGG8_AGRFC, A0A4Z0SAD8_9HYPH, A0A4Z0SX09_9HYPH, A0A7Z8K4Y9_9HYPH, A0A3S2U2I1_9HYPH, A0A7I0RM16_9HYPH, A0A5D9CT02_9HYPH, A0A083ZID2_RHIRD, A0A0X7A9B9_9HYPH |
| KEGG ID | atu:Atu4345 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 8.8e-33 | 4..133 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-158 | MPIYLQIDGIQGDATHEEHRKWMDIEAIHWNVARNMNTSAGSAANREASEPTISEVILTKVSDSSSTKLFQEACAGRTGKLATIHLVTTGNPGNTYIEYLLTNTLIASYSVDSSGDRPVETIKLNFTKMEVKYTPFDDNNSPQSPMIASYDLATTKAA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9890 | - | - |
Protein sequence: 159 a.a.
>T6CP015595 NZ_CP033035:1440824-1441300 [Agrobacterium fabrum] [TssD]
MPIYLQIDGIQGDATHEEHRKWMDIEAIHWNVARNMNTSAGSAANREASEPTISEVILTKVSDSSSTKLFQEACAGRTGK
LATIHLVTTGNPGNTYIEYLLTNTLIASYSVDSSGDRPVETIKLNFTKMEVKYTPFDDNNSPQSPMIASYDLATTKAA*
MPIYLQIDGIQGDATHEEHRKWMDIEAIHWNVARNMNTSAGSAANREASEPTISEVILTKVSDSSSTKLFQEACAGRTGK
LATIHLVTTGNPGNTYIEYLLTNTLIASYSVDSSGDRPVETIKLNFTKMEVKYTPFDDNNSPQSPMIASYDLATTKAA*
Nucleotide sequence: 477 bp
>T6CP015595 NZ_CP033035:1440824-1441300 [Agrobacterium fabrum] [TssD]
ATGCCAATTTATCTGCAGATTGACGGTATCCAGGGCGACGCCACCCATGAAGAACATCGCAAGTGGATGGATATTGAAGC
CATTCACTGGAATGTGGCCCGCAACATGAACACGTCGGCTGGTTCTGCTGCAAACCGCGAAGCGTCCGAACCGACCATTT
CGGAAGTCATTCTGACAAAGGTTAGCGACTCGTCTTCCACGAAGCTTTTCCAGGAGGCCTGTGCTGGCCGCACTGGCAAG
CTTGCAACGATCCATCTGGTGACGACCGGCAATCCGGGCAACACCTATATCGAATACCTGCTGACGAACACCCTTATCGC
CAGCTACTCGGTGGATTCCAGCGGGGATCGTCCGGTGGAGACCATCAAGCTCAACTTCACGAAAATGGAAGTGAAGTACA
CGCCGTTCGACGACAACAACTCGCCGCAGTCTCCGATGATCGCTTCCTACGATCTGGCGACGACCAAGGCTGCTTGA
ATGCCAATTTATCTGCAGATTGACGGTATCCAGGGCGACGCCACCCATGAAGAACATCGCAAGTGGATGGATATTGAAGC
CATTCACTGGAATGTGGCCCGCAACATGAACACGTCGGCTGGTTCTGCTGCAAACCGCGAAGCGTCCGAACCGACCATTT
CGGAAGTCATTCTGACAAAGGTTAGCGACTCGTCTTCCACGAAGCTTTTCCAGGAGGCCTGTGCTGGCCGCACTGGCAAG
CTTGCAACGATCCATCTGGTGACGACCGGCAATCCGGGCAACACCTATATCGAATACCTGCTGACGAACACCCTTATCGC
CAGCTACTCGGTGGATTCCAGCGGGGATCGTCCGGTGGAGACCATCAAGCTCAACTTCACGAAAATGGAAGTGAAGTACA
CGCCGTTCGACGACAACAACTCGCCGCAGTCTCCGATGATCGCTTCCTACGATCTGGCGACGACCAAGGCTGCTTGA