Detailed information of component protein


Summary

Component ID T6CP015594
Component protein type TssH
T6SS ID (Type) T6SS01243 experimental (Type i5)
Strain Agrobacterium fabrum strain 12D13
Replicon chromosome
Sequence Protein sequence (893 a.a.); Nucleotide sequence (2679 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) At12D13_RS20960
Coordinate (Strand) 1438088..1440766 (+)
NCBI ID WP_121691719.1
RefSeq NZ_CP033035
Uniprot ID UPI000EF5B82A
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 2.7e-36 594..758
AAA_lid_9 PF17871.3 3e-27 363..461
ClpB_D2-small PF10431.11 4.7e-12 766..840
AAA PF00004.31 1.9e-11 223..332
Clp_N PF02861.22 5.6e-06 24..73
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-892 MSHIDLNRLVGALEPDLRVTLEAAASVAVRMGHRYVDIPHWLLAVVDAGIYAETFDELKIPLPVLKAEIGRSLEEAIIGDGEALSLSQNILTAAREAWILASLEAGRDRVTLCDLLLAMDEETSLRSFVRSAFPSLKAMDRGALERLRSSAENGAGVDASSALTSSGEASSAQAAGQNDFLRLYTHDMTADARNGKVDPVIGRDDELRQLVDILTRRRQNNPILVGEAGVGKTAVAEALALEIASGNVPEKLRNVRLLNLDISLLQAGAGVKGEFERRLHGVIDAVKRSAEPVILFIDEAHGLVGAGGAAGQGDAANILKPALARGEVRTVAATTWSEYKKYFEKDAALTRRFQPVHVREPDEATAIRMLRGVADTFVSHHNVTIRDEAIVAAVQLSARYMPARQLPDKAVSLLDTAAAAVSLARQTLPERLRAMESERRLLSEELNWLLREPQDEDMQNHIQSIRDELERLEGGIDDLRSRYDAEMAELAALSEEQPAETGASNVSHLRPAAEMRPANAERLVPTVVDREAIAAVVSRWTGIPLGKLLADQIESARTLDVRMRQRVVGQDAAITRIADAMRTARAGLSDPRRPPAVFFLVGMSGTGKTETALSLADMLYGGNSHLTTINMSEFKEEHKVSLLLGSPPGYVGFGEGGVLTEAVRRRPFGVLLLDEIDKAHPGVQDIFYQVFDKGVLRDGEGRDVDFKNTTIFMTANTGSELLSALAADPDTMPEGEALEALLMPELTKQFKPAFLGRTIILPFMPLGMEELARIVDMQIGKIRERVLATYGTDLRLSDAARDALVARAGASEIGARAIEIMIGKDLLPPLSSFFLEKVIAGERVGKIVVDFGENGFGIRAEAAGEADEFAVTEEVGVDKVAASDGATRRMRH


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9980 - -


  Protein sequence: 893 a.a.    

>T6CP015594 NZ_CP033035:1438088-1440766 [Agrobacterium fabrum] [TssH]
MSHIDLNRLVGALEPDLRVTLEAAASVAVRMGHRYVDIPHWLLAVVDAGIYAETFDELKIPLPVLKAEIGRSLEEAIIGD
GEALSLSQNILTAAREAWILASLEAGRDRVTLCDLLLAMDEETSLRSFVRSAFPSLKAMDRGALERLRSSAENGAGVDAS
SALTSSGEASSAQAAGQNDFLRLYTHDMTADARNGKVDPVIGRDDELRQLVDILTRRRQNNPILVGEAGVGKTAVAEALA
LEIASGNVPEKLRNVRLLNLDISLLQAGAGVKGEFERRLHGVIDAVKRSAEPVILFIDEAHGLVGAGGAAGQGDAANILK
PALARGEVRTVAATTWSEYKKYFEKDAALTRRFQPVHVREPDEATAIRMLRGVADTFVSHHNVTIRDEAIVAAVQLSARY
MPARQLPDKAVSLLDTAAAAVSLARQTLPERLRAMESERRLLSEELNWLLREPQDEDMQNHIQSIRDELERLEGGIDDLR
SRYDAEMAELAALSEEQPAETGASNVSHLRPAAEMRPANAERLVPTVVDREAIAAVVSRWTGIPLGKLLADQIESARTLD
VRMRQRVVGQDAAITRIADAMRTARAGLSDPRRPPAVFFLVGMSGTGKTETALSLADMLYGGNSHLTTINMSEFKEEHKV
SLLLGSPPGYVGFGEGGVLTEAVRRRPFGVLLLDEIDKAHPGVQDIFYQVFDKGVLRDGEGRDVDFKNTTIFMTANTGSE
LLSALAADPDTMPEGEALEALLMPELTKQFKPAFLGRTIILPFMPLGMEELARIVDMQIGKIRERVLATYGTDLRLSDAA
RDALVARAGASEIGARAIEIMIGKDLLPPLSSFFLEKVIAGERVGKIVVDFGENGFGIRAEAAGEADEFAVTEEVGVDKV
AASDGATRRMRH*

  Nucleotide sequence: 2679 bp    

>T6CP015594 NZ_CP033035:1438088-1440766 [Agrobacterium fabrum] [TssH]
ATGTCGCATATCGATCTCAATCGCCTCGTTGGAGCGCTTGAGCCAGACCTGCGCGTTACCCTCGAAGCTGCGGCTTCCGT
TGCGGTGCGTATGGGGCACAGGTACGTGGATATCCCGCATTGGCTGCTGGCGGTTGTAGATGCCGGTATCTATGCGGAAA
CATTCGACGAATTAAAAATTCCACTTCCGGTATTGAAGGCTGAAATCGGCCGCAGTCTGGAAGAGGCCATTATCGGCGAC
GGGGAGGCCTTGTCGCTCTCCCAGAACATCCTCACGGCAGCCCGGGAGGCATGGATTCTTGCGTCGCTGGAGGCTGGCCG
TGACCGCGTGACCCTTTGCGATCTCCTGTTGGCGATGGATGAGGAAACCTCACTTCGCTCCTTTGTCCGCTCGGCATTTC
CGTCTCTCAAGGCGATGGATCGCGGGGCGCTTGAGCGTCTTCGCAGCTCGGCCGAGAACGGCGCAGGCGTGGATGCTTCT
TCAGCGCTGACAAGTTCAGGAGAGGCAAGCTCGGCACAGGCCGCCGGCCAGAATGATTTCTTGCGCCTTTACACCCACGA
CATGACCGCCGATGCCCGCAACGGCAAGGTCGATCCTGTTATCGGCCGCGATGATGAGTTGCGCCAGCTCGTTGATATTC
TGACCCGCCGCCGACAGAACAATCCTATTCTGGTGGGCGAGGCCGGCGTGGGCAAGACCGCGGTCGCCGAAGCGCTGGCA
TTGGAAATCGCCTCCGGCAACGTTCCGGAGAAACTGCGCAATGTCCGCCTGCTGAACCTCGATATTTCGCTGCTGCAGGC
CGGTGCCGGCGTGAAAGGTGAGTTCGAGCGGCGCCTGCACGGTGTGATCGATGCGGTCAAGCGTTCGGCCGAGCCGGTCA
TCCTGTTCATCGATGAGGCCCATGGCCTTGTTGGCGCGGGTGGTGCGGCGGGCCAGGGTGATGCGGCGAATATTCTTAAA
CCCGCACTCGCACGAGGCGAGGTGCGGACCGTCGCGGCAACGACGTGGAGCGAATACAAGAAATATTTCGAGAAGGATGC
GGCGCTCACGCGTCGTTTCCAGCCCGTGCATGTGCGCGAGCCGGATGAGGCGACCGCGATACGGATGTTGCGCGGTGTGG
CGGATACTTTCGTCAGCCATCACAACGTCACCATTCGTGACGAGGCGATCGTGGCTGCCGTGCAATTATCTGCTCGCTAC
ATGCCGGCGCGGCAATTGCCGGACAAGGCGGTCAGCCTGCTCGATACCGCCGCCGCGGCCGTTTCGCTGGCGCGCCAGAC
CCTGCCGGAGCGGCTGCGCGCCATGGAAAGCGAGCGGCGCCTGCTGTCGGAGGAGTTGAACTGGCTTCTGCGTGAACCGC
AGGATGAGGACATGCAAAACCACATCCAGTCGATACGCGACGAACTTGAACGGCTCGAGGGCGGGATCGATGATCTTCGC
AGCCGTTATGACGCGGAAATGGCTGAACTGGCGGCGCTCAGTGAAGAGCAGCCGGCCGAAACCGGCGCGTCGAATGTTTC
GCACCTGCGGCCTGCCGCGGAGATGCGGCCCGCAAATGCCGAAAGACTTGTGCCGACAGTGGTTGATCGTGAAGCGATCG
CCGCCGTGGTCTCGCGATGGACCGGGATTCCCCTCGGTAAACTTCTGGCGGACCAGATCGAAAGCGCCCGCACGCTGGAT
GTGCGCATGCGGCAGCGGGTGGTTGGGCAGGATGCCGCAATTACCCGGATTGCCGATGCCATGCGCACCGCCCGTGCCGG
ATTGTCCGATCCGCGTCGCCCGCCGGCGGTGTTTTTCCTTGTCGGCATGTCCGGAACCGGCAAGACCGAAACGGCGCTGT
CGCTGGCCGATATGCTCTATGGCGGCAACAGCCATCTGACGACAATCAACATGTCGGAGTTCAAGGAGGAGCATAAGGTT
TCGCTGCTTCTCGGCTCACCGCCCGGCTATGTCGGTTTCGGCGAAGGTGGAGTGCTGACGGAAGCGGTGCGCCGCCGGCC
GTTCGGCGTTCTGCTTCTCGATGAGATCGACAAGGCCCATCCGGGTGTGCAGGATATTTTCTATCAGGTGTTCGACAAGG
GCGTGCTTCGCGATGGCGAAGGCCGCGACGTCGATTTCAAGAACACCACGATCTTCATGACGGCCAATACCGGTTCGGAA
TTGCTGTCGGCGCTTGCCGCCGATCCCGACACGATGCCGGAAGGTGAGGCGCTGGAAGCGCTTCTGATGCCGGAGCTTAC
CAAACAGTTCAAGCCCGCATTCCTCGGGCGCACGATCATTCTGCCCTTCATGCCGCTCGGCATGGAGGAGCTTGCAAGGA
TCGTGGACATGCAGATTGGCAAGATCAGGGAACGTGTGCTCGCAACATATGGCACCGACCTGAGATTGTCCGATGCGGCG
CGCGATGCCTTGGTGGCGCGCGCCGGTGCAAGTGAAATCGGCGCACGCGCCATCGAAATCATGATCGGCAAGGATCTCCT
GCCGCCTCTTTCCAGCTTTTTCCTCGAGAAAGTCATCGCGGGAGAACGCGTTGGGAAGATCGTTGTCGATTTTGGTGAAA
ACGGGTTCGGCATTCGTGCCGAAGCGGCTGGGGAAGCAGATGAATTCGCCGTAACCGAAGAGGTTGGGGTGGATAAAGTT
GCCGCGTCGGATGGGGCTACCCGACGCATGCGGCATTAA