Detailed information of component protein
Summary
Component ID | T6CP015593 |
Component protein type | TssA |
T6SS ID (Type) | T6SS01243 (Type i5) |
Strain | Agrobacterium fabrum strain 12D13 |
Replicon | chromosome |
Sequence | Protein sequence (352 a.a.); Nucleotide sequence (1056 bp) |
Reference |
External database links
Locus tag (Gene) | At12D13_RS20955 |
Coordinate (Strand) | 1436812..1437867 (-) |
NCBI ID | WP_010973762.1 |
RefSeq | NZ_CP033035 |
Uniprot ID | A0A7Z7BQW2_9HYPH, A0A7I0RMM6_9HYPH, A0A0F4FLA7_RHIRD |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
ImpA_N | PF06812.14 | 1.8e-22 | 15..133 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-351 | MDTQHVKRDIEFLGNCGDNIRNDSRTREIYYRIKDERNQARAEERAASPQDNLKISSSWDSVSNLGLQIIYSESKDVEILAWLAEASLRLRGFHGLREIYELCGDLFYNHWDSLRSISDDNDEEKFAPFAGLNGIGSEGTLVQPLRLASLIPGGKFGEHSLWDFQLAQRPNESKRREELYRIASEAGVAAMSSHLAAVNTCLSSFDAITAVLSERCGQAAPPSSNIRNTLIEAAAAIRTLGGRDQEPAPVEQTPAIAAGTDESGQSAARTSPASPEGISSRDEAFETLLSVARYFRRTEPHSPISLSIETLVRRGRMDFSELLAELLPETQARNAVLTAAGIKPGGDNNGK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9809 | - | - |
Protein sequence: 352 a.a.
>T6CP015593 NZ_CP033035:c1437867-1436812 [Agrobacterium fabrum] [TssA]
MDTQHVKRDIEFLGNCGDNIRNDSRTREIYYRIKDERNQARAEERAASPQDNLKISSSWDSVSNLGLQIIYSESKDVEIL
AWLAEASLRLRGFHGLREIYELCGDLFYNHWDSLRSISDDNDEEKFAPFAGLNGIGSEGTLVQPLRLASLIPGGKFGEHS
LWDFQLAQRPNESKRREELYRIASEAGVAAMSSHLAAVNTCLSSFDAITAVLSERCGQAAPPSSNIRNTLIEAAAAIRTL
GGRDQEPAPVEQTPAIAAGTDESGQSAARTSPASPEGISSRDEAFETLLSVARYFRRTEPHSPISLSIETLVRRGRMDFS
ELLAELLPETQARNAVLTAAGIKPGGDNNGK*
MDTQHVKRDIEFLGNCGDNIRNDSRTREIYYRIKDERNQARAEERAASPQDNLKISSSWDSVSNLGLQIIYSESKDVEIL
AWLAEASLRLRGFHGLREIYELCGDLFYNHWDSLRSISDDNDEEKFAPFAGLNGIGSEGTLVQPLRLASLIPGGKFGEHS
LWDFQLAQRPNESKRREELYRIASEAGVAAMSSHLAAVNTCLSSFDAITAVLSERCGQAAPPSSNIRNTLIEAAAAIRTL
GGRDQEPAPVEQTPAIAAGTDESGQSAARTSPASPEGISSRDEAFETLLSVARYFRRTEPHSPISLSIETLVRRGRMDFS
ELLAELLPETQARNAVLTAAGIKPGGDNNGK*
Nucleotide sequence: 1056 bp
>T6CP015593 NZ_CP033035:c1437867-1436812 [Agrobacterium fabrum] [TssA]
TTGGATACACAGCATGTTAAAAGAGATATAGAGTTTTTGGGGAATTGCGGAGATAATATCCGCAACGATTCAAGAACGCG
TGAAATATACTATAGAATTAAGGACGAAAGAAACCAGGCACGCGCAGAAGAACGGGCCGCCTCCCCTCAGGATAACCTGA
AGATCTCCAGTAGCTGGGACAGTGTCAGCAATCTTGGATTGCAGATTATATATTCCGAAAGCAAGGATGTTGAAATATTG
GCATGGCTTGCGGAAGCAAGCCTGCGACTTCGCGGCTTCCATGGACTGCGCGAAATCTACGAGCTTTGTGGTGATCTTTT
TTACAACCACTGGGACTCATTGCGCTCGATCAGCGACGATAATGACGAAGAAAAATTTGCACCTTTTGCGGGATTGAATG
GCATTGGCAGCGAGGGAACACTTGTTCAGCCACTCAGGCTGGCATCGCTGATCCCCGGAGGCAAATTCGGAGAACACAGT
CTCTGGGATTTCCAGCTGGCGCAGCGGCCGAACGAGAGCAAACGCCGCGAAGAACTGTACCGGATAGCCTCCGAGGCCGG
TGTTGCCGCCATGTCTTCCCATCTGGCAGCGGTGAATACCTGTCTCTCCTCGTTTGACGCCATTACCGCCGTTCTTTCCG
AACGTTGCGGCCAGGCCGCCCCCCCGAGCTCCAATATCCGCAACACGCTTATCGAAGCGGCCGCGGCAATTCGCACGCTG
GGTGGGCGCGACCAGGAACCGGCACCGGTCGAACAGACGCCGGCCATTGCTGCGGGCACCGATGAAAGCGGGCAGTCGGC
CGCGCGGACATCCCCGGCATCCCCGGAAGGCATATCTTCGCGCGATGAGGCGTTTGAAACTCTTCTTTCGGTTGCGCGTT
ACTTTCGCCGAACCGAACCGCATTCACCGATCTCGCTCTCCATCGAAACGCTGGTTCGCAGGGGGCGCATGGATTTCTCG
GAACTGCTGGCCGAGCTTCTGCCGGAAACGCAGGCCCGAAACGCCGTTCTGACGGCCGCCGGCATCAAACCCGGCGGAGA
CAATAACGGGAAATAA
TTGGATACACAGCATGTTAAAAGAGATATAGAGTTTTTGGGGAATTGCGGAGATAATATCCGCAACGATTCAAGAACGCG
TGAAATATACTATAGAATTAAGGACGAAAGAAACCAGGCACGCGCAGAAGAACGGGCCGCCTCCCCTCAGGATAACCTGA
AGATCTCCAGTAGCTGGGACAGTGTCAGCAATCTTGGATTGCAGATTATATATTCCGAAAGCAAGGATGTTGAAATATTG
GCATGGCTTGCGGAAGCAAGCCTGCGACTTCGCGGCTTCCATGGACTGCGCGAAATCTACGAGCTTTGTGGTGATCTTTT
TTACAACCACTGGGACTCATTGCGCTCGATCAGCGACGATAATGACGAAGAAAAATTTGCACCTTTTGCGGGATTGAATG
GCATTGGCAGCGAGGGAACACTTGTTCAGCCACTCAGGCTGGCATCGCTGATCCCCGGAGGCAAATTCGGAGAACACAGT
CTCTGGGATTTCCAGCTGGCGCAGCGGCCGAACGAGAGCAAACGCCGCGAAGAACTGTACCGGATAGCCTCCGAGGCCGG
TGTTGCCGCCATGTCTTCCCATCTGGCAGCGGTGAATACCTGTCTCTCCTCGTTTGACGCCATTACCGCCGTTCTTTCCG
AACGTTGCGGCCAGGCCGCCCCCCCGAGCTCCAATATCCGCAACACGCTTATCGAAGCGGCCGCGGCAATTCGCACGCTG
GGTGGGCGCGACCAGGAACCGGCACCGGTCGAACAGACGCCGGCCATTGCTGCGGGCACCGATGAAAGCGGGCAGTCGGC
CGCGCGGACATCCCCGGCATCCCCGGAAGGCATATCTTCGCGCGATGAGGCGTTTGAAACTCTTCTTTCGGTTGCGCGTT
ACTTTCGCCGAACCGAACCGCATTCACCGATCTCGCTCTCCATCGAAACGCTGGTTCGCAGGGGGCGCATGGATTTCTCG
GAACTGCTGGCCGAGCTTCTGCCGGAAACGCAGGCCCGAAACGCCGTTCTGACGGCCGCCGGCATCAAACCCGGCGGAGA
CAATAACGGGAAATAA