Detailed information of component protein
Summary
| Component ID | T6CP015592 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS01243  (Type i5) |
| Strain | Agrobacterium fabrum strain 12D13 |
| Replicon | chromosome |
| Sequence | Protein sequence (170 a.a.); Nucleotide sequence (510 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | At12D13_RS20950 |
| Coordinate (Strand) | 1436237..1436746 (-) |
| NCBI ID | WP_010973761.1 |
| RefSeq | NZ_CP033035 |
| Uniprot ID | A0A2W5FH47_9HYPH, A0A2V5CS81_9HYPH, A9CGG6_AGRFC, A0A7I0RLR5_9HYPH, A0A083ZIC9_RHIRD, A0A178GYX0_AGRRH |
| KEGG ID | atu:Atu4342, aro:B0909_16360 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 2e-61 | 9..162 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-169 | MASVHEKLERVRKPRVHIKYEVETEGAMVVKELPFVVGVLGDFSGNPTQPLKPFGERKFVQIDRDNFDEVMRRMTPGLNISVANTLQKDGTDMQVNLKFESMDDFEPGAVVQQVPALKALLDARNELRDLLSKADRSEDLERMLEDILQNKTDLATLVSELKEKNGASE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9970 | - | - |
Protein sequence: 170 a.a.
>T6CP015592 NZ_CP033035:c1436746-1436237 [Agrobacterium fabrum] [TssB]
MASVHEKLERVRKPRVHIKYEVETEGAMVVKELPFVVGVLGDFSGNPTQPLKPFGERKFVQIDRDNFDEVMRRMTPGLNI
SVANTLQKDGTDMQVNLKFESMDDFEPGAVVQQVPALKALLDARNELRDLLSKADRSEDLERMLEDILQNKTDLATLVSE
LKEKNGASE*
MASVHEKLERVRKPRVHIKYEVETEGAMVVKELPFVVGVLGDFSGNPTQPLKPFGERKFVQIDRDNFDEVMRRMTPGLNI
SVANTLQKDGTDMQVNLKFESMDDFEPGAVVQQVPALKALLDARNELRDLLSKADRSEDLERMLEDILQNKTDLATLVSE
LKEKNGASE*
Nucleotide sequence: 510 bp
>T6CP015592 NZ_CP033035:c1436746-1436237 [Agrobacterium fabrum] [TssB]
ATGGCAAGTGTACATGAAAAGCTGGAGCGGGTTCGCAAACCACGCGTTCACATTAAATACGAAGTCGAAACCGAAGGCGC
GATGGTGGTCAAGGAACTGCCTTTCGTAGTCGGCGTGCTCGGTGATTTCTCCGGCAATCCCACCCAGCCGCTCAAGCCGT
TCGGTGAACGCAAATTCGTTCAGATCGACCGCGACAATTTCGACGAAGTCATGCGCCGCATGACGCCGGGCCTCAACATT
TCCGTTGCCAACACGCTGCAGAAAGACGGCACGGACATGCAGGTCAACCTGAAGTTCGAAAGCATGGACGATTTCGAACC
CGGCGCCGTTGTGCAGCAGGTTCCGGCGCTCAAGGCGCTTCTGGATGCCCGCAACGAGCTGCGCGATCTGCTTTCCAAGG
CCGACCGTTCGGAAGATCTGGAACGGATGCTGGAAGATATTCTGCAGAACAAGACCGACCTCGCAACGCTGGTTTCCGAA
CTGAAGGAAAAGAACGGCGCGAGCGAATAA
ATGGCAAGTGTACATGAAAAGCTGGAGCGGGTTCGCAAACCACGCGTTCACATTAAATACGAAGTCGAAACCGAAGGCGC
GATGGTGGTCAAGGAACTGCCTTTCGTAGTCGGCGTGCTCGGTGATTTCTCCGGCAATCCCACCCAGCCGCTCAAGCCGT
TCGGTGAACGCAAATTCGTTCAGATCGACCGCGACAATTTCGACGAAGTCATGCGCCGCATGACGCCGGGCCTCAACATT
TCCGTTGCCAACACGCTGCAGAAAGACGGCACGGACATGCAGGTCAACCTGAAGTTCGAAAGCATGGACGATTTCGAACC
CGGCGCCGTTGTGCAGCAGGTTCCGGCGCTCAAGGCGCTTCTGGATGCCCGCAACGAGCTGCGCGATCTGCTTTCCAAGG
CCGACCGTTCGGAAGATCTGGAACGGATGCTGGAAGATATTCTGCAGAACAAGACCGACCTCGCAACGCTGGTTTCCGAA
CTGAAGGAAAAGAACGGCGCGAGCGAATAA