Detailed information of component protein


Summary

Component ID T6CP015592
Component protein type TssB
T6SS ID (Type) T6SS01243 experimental (Type i5)
Strain Agrobacterium fabrum strain 12D13
Replicon chromosome
Sequence Protein sequence (170 a.a.); Nucleotide sequence (510 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) At12D13_RS20950
Coordinate (Strand) 1436237..1436746 (-)
NCBI ID WP_010973761.1
RefSeq NZ_CP033035
Uniprot ID A0A2W5FH47_9HYPH, A0A2V5CS81_9HYPH, A9CGG6_AGRFC, A0A7I0RLR5_9HYPH, A0A839DK84_9HYPH, A0A083ZIC9_RHIRD
KEGG ID atu:Atu4342
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VipA PF05591.14 2e-61 9..162

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-169 MASVHEKLERVRKPRVHIKYEVETEGAMVVKELPFVVGVLGDFSGNPTQPLKPFGERKFVQIDRDNFDEVMRRMTPGLNISVANTLQKDGTDMQVNLKFESMDDFEPGAVVQQVPALKALLDARNELRDLLSKADRSEDLERMLEDILQNKTDLATLVSELKEKNGASE



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9970 - -



  Protein sequence: 170 a.a.    

>T6CP015592 NZ_CP033035:c1436746-1436237 [Agrobacterium fabrum] [TssB]
MASVHEKLERVRKPRVHIKYEVETEGAMVVKELPFVVGVLGDFSGNPTQPLKPFGERKFVQIDRDNFDEVMRRMTPGLNI
SVANTLQKDGTDMQVNLKFESMDDFEPGAVVQQVPALKALLDARNELRDLLSKADRSEDLERMLEDILQNKTDLATLVSE
LKEKNGASE*

  Nucleotide sequence: 510 bp    

>T6CP015592 NZ_CP033035:c1436746-1436237 [Agrobacterium fabrum] [TssB]
ATGGCAAGTGTACATGAAAAGCTGGAGCGGGTTCGCAAACCACGCGTTCACATTAAATACGAAGTCGAAACCGAAGGCGC
GATGGTGGTCAAGGAACTGCCTTTCGTAGTCGGCGTGCTCGGTGATTTCTCCGGCAATCCCACCCAGCCGCTCAAGCCGT
TCGGTGAACGCAAATTCGTTCAGATCGACCGCGACAATTTCGACGAAGTCATGCGCCGCATGACGCCGGGCCTCAACATT
TCCGTTGCCAACACGCTGCAGAAAGACGGCACGGACATGCAGGTCAACCTGAAGTTCGAAAGCATGGACGATTTCGAACC
CGGCGCCGTTGTGCAGCAGGTTCCGGCGCTCAAGGCGCTTCTGGATGCCCGCAACGAGCTGCGCGATCTGCTTTCCAAGG
CCGACCGTTCGGAAGATCTGGAACGGATGCTGGAAGATATTCTGCAGAACAAGACCGACCTCGCAACGCTGGTTTCCGAA
CTGAAGGAAAAGAACGGCGCGAGCGAATAA