Detailed information of component protein


Summary

Component ID T6CP015590
Component protein type TssC
T6SS ID (Type) T6SS01243 experimental (Type i5)
Strain Agrobacterium fabrum strain 12D13
Replicon chromosome
Sequence Protein sequence (465 a.a.); Nucleotide sequence (1395 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) At12D13_RS20940
Coordinate (Strand) 1433213..1434607 (-)
NCBI ID WP_121691717.1
RefSeq NZ_CP033035
Uniprot ID UPI000EF56623
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 5.6e-104 14..325
VipB_2 PF18945.2 2.3e-40 335..444
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-464 MAHQSFPDARIFADQLIAVIDEALTGQVNAILHHPDFQAMEARWRGLAMIVREAGRSTDVKVKLLNASWRDLARNTERATDFDQSHLFEVVYNREFGMPGGEPVGLMIGDYAFSPDDLQGADSITTLSQIGMVAAAAFCPFVAAAAPSAVGLQEFSELSRVHDFSSLKQEKSRLRWNALRARDDSRFVGLVAPRVLLRSPYRPYARGRDDGFPFREHVAESGETLLWGNAAFAFATVVVRNFVDSGWFADLRGVTQDAVDGGMLSPRQLPPFDLGIESNGLSAQPPVEVQLTTGQEQQFSDLGIVPVSTTYLSGMAIFNANQSLHAPGHYSTEAARQNARLAAMLQYVLCASRFSHYLKVIMRDDIGQLSDATTIERKLESWLSSYTLGNDDAEASLRTRYPLRSAGINVFEVPGKPGTFSCTVRLQPHFQLDDVSTSFHLIAETTMPATAASRSSAEPQRISA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9970 - -


  Protein sequence: 465 a.a.    

>T6CP015590 NZ_CP033035:c1434607-1433213 [Agrobacterium fabrum] [TssC]
MAHQSFPDARIFADQLIAVIDEALTGQVNAILHHPDFQAMEARWRGLAMIVREAGRSTDVKVKLLNASWRDLARNTERAT
DFDQSHLFEVVYNREFGMPGGEPVGLMIGDYAFSPDDLQGADSITTLSQIGMVAAAAFCPFVAAAAPSAVGLQEFSELSR
VHDFSSLKQEKSRLRWNALRARDDSRFVGLVAPRVLLRSPYRPYARGRDDGFPFREHVAESGETLLWGNAAFAFATVVVR
NFVDSGWFADLRGVTQDAVDGGMLSPRQLPPFDLGIESNGLSAQPPVEVQLTTGQEQQFSDLGIVPVSTTYLSGMAIFNA
NQSLHAPGHYSTEAARQNARLAAMLQYVLCASRFSHYLKVIMRDDIGQLSDATTIERKLESWLSSYTLGNDDAEASLRTR
YPLRSAGINVFEVPGKPGTFSCTVRLQPHFQLDDVSTSFHLIAETTMPATAASRSSAEPQRISA*

  Nucleotide sequence: 1395 bp    

>T6CP015590 NZ_CP033035:c1434607-1433213 [Agrobacterium fabrum] [TssC]
ATGGCGCATCAGTCCTTTCCGGACGCCCGCATTTTCGCCGACCAGCTCATCGCCGTCATCGATGAAGCGCTGACCGGCCA
GGTGAACGCCATTCTCCACCATCCTGATTTTCAGGCGATGGAGGCGAGATGGCGCGGGCTTGCCATGATCGTGCGCGAGG
CGGGCCGCAGCACCGACGTGAAGGTGAAACTGCTGAACGCCAGCTGGCGCGACCTTGCCCGGAACACGGAACGCGCCACC
GACTTCGACCAGAGCCATCTTTTCGAAGTCGTCTATAACCGCGAATTCGGCATGCCCGGCGGTGAACCGGTGGGCTTGAT
GATCGGTGACTACGCCTTTTCTCCCGATGATCTTCAGGGTGCGGATTCCATCACCACGCTGTCGCAGATTGGGATGGTGG
CTGCTGCGGCCTTCTGCCCCTTCGTGGCGGCAGCCGCGCCTTCTGCCGTCGGCCTGCAGGAATTTTCCGAACTCAGCCGG
GTTCACGACTTTTCCTCGCTGAAGCAGGAGAAATCTCGGCTTCGCTGGAATGCGCTTCGCGCCCGCGACGATTCTCGCTT
CGTCGGCCTTGTCGCGCCGCGTGTTTTGCTGCGCTCTCCCTACAGGCCCTATGCGCGTGGACGCGATGACGGGTTTCCAT
TCCGCGAACATGTGGCGGAAAGCGGCGAGACACTGCTCTGGGGTAATGCCGCCTTCGCCTTTGCAACCGTGGTCGTGCGC
AACTTCGTCGATTCCGGCTGGTTTGCGGATCTGCGCGGTGTGACGCAGGATGCGGTGGATGGCGGCATGCTCTCGCCCCG
GCAATTGCCGCCGTTTGATCTCGGCATCGAAAGCAACGGTCTTTCCGCCCAGCCGCCCGTCGAGGTGCAACTGACGACAG
GACAGGAACAGCAGTTTTCCGATCTTGGCATCGTGCCCGTCTCCACCACCTATCTTTCCGGCATGGCGATCTTCAACGCC
AACCAGTCTCTGCACGCTCCCGGCCATTATTCCACCGAAGCGGCGAGGCAGAACGCCCGCCTTGCCGCCATGCTGCAATA
TGTGCTGTGCGCTTCCCGGTTCTCGCATTACCTCAAGGTCATCATGCGTGATGACATCGGCCAGCTGAGCGATGCCACGA
CGATCGAGCGCAAGCTGGAAAGCTGGCTATCCTCCTACACGCTCGGCAATGACGATGCGGAAGCGTCGTTGCGCACGCGC
TATCCGCTGCGCTCTGCCGGGATCAATGTCTTCGAGGTTCCCGGCAAGCCCGGAACATTCTCCTGCACCGTGCGCCTCCA
GCCGCATTTCCAGCTCGATGACGTCTCCACGAGCTTCCACCTCATTGCCGAAACCACGATGCCGGCCACCGCCGCATCCC
GGTCTTCCGCCGAGCCGCAAAGGATATCCGCATGA