Detailed information of component protein
Summary
| Component ID | T6CP015589 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS01243  (Type i5) |
| Strain | Agrobacterium fabrum strain 12D13 |
| Replicon | chromosome |
| Sequence | Protein sequence (170 a.a.); Nucleotide sequence (510 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | At12D13_RS20930 |
| Coordinate (Strand) | 1431890..1432399 (-) |
| NCBI ID | WP_121691715.1 |
| RefSeq | NZ_CP033035 |
| Uniprot ID | UPI000EF5898E |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 1.4e-13 | 44..143 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-169 | VVDPLEQYRARQRTLSRSVLDRLLDDAPDAETDMLVSLKDQASEMREVIRRDLEALLNTRRNPAGPPAVLKELADALVSYGVDGILSANLVTDASKAQLARSIERRISLFETRLADVHVTILKNRTDGDRALRMRIQASFRLQEGMPPISFESRIDPSTQRFLVEATNG |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9866 | - | - |
Protein sequence: 170 a.a.
>T6CP015589 NZ_CP033035:c1432399-1431890 [Agrobacterium fabrum] [TssE]
VVDPLEQYRARQRTLSRSVLDRLLDDAPDAETDMLVSLKDQASEMREVIRRDLEALLNTRRNPAGPPAVLKELADALVSY
GVDGILSANLVTDASKAQLARSIERRISLFETRLADVHVTILKNRTDGDRALRMRIQASFRLQEGMPPISFESRIDPSTQ
RFLVEATNG*
VVDPLEQYRARQRTLSRSVLDRLLDDAPDAETDMLVSLKDQASEMREVIRRDLEALLNTRRNPAGPPAVLKELADALVSY
GVDGILSANLVTDASKAQLARSIERRISLFETRLADVHVTILKNRTDGDRALRMRIQASFRLQEGMPPISFESRIDPSTQ
RFLVEATNG*
Nucleotide sequence: 510 bp
>T6CP015589 NZ_CP033035:c1432399-1431890 [Agrobacterium fabrum] [TssE]
GTGGTTGATCCGCTGGAGCAATATCGCGCACGGCAAAGGACGCTGTCGCGCTCCGTTCTGGACCGGCTGCTCGATGACGC
ACCAGACGCGGAAACGGATATGCTCGTCAGTCTGAAGGATCAGGCCAGCGAGATGCGCGAGGTGATCCGCCGCGATCTCG
AGGCATTGCTCAATACCCGCCGCAACCCCGCCGGACCGCCAGCCGTATTGAAGGAATTGGCAGATGCGCTGGTGAGCTAT
GGCGTGGACGGCATTCTTTCGGCCAATCTGGTGACGGATGCCTCCAAGGCGCAGCTCGCACGCAGCATCGAGCGGCGGAT
TTCCCTGTTCGAAACCCGCCTTGCCGATGTGCATGTGACGATCCTGAAAAACCGCACGGATGGCGACCGGGCGCTTCGCA
TGCGCATACAGGCAAGCTTCCGTCTTCAGGAAGGCATGCCGCCGATCAGCTTTGAATCCCGCATCGATCCGTCCACGCAA
CGTTTCCTGGTGGAGGCGACGAATGGCTGA
GTGGTTGATCCGCTGGAGCAATATCGCGCACGGCAAAGGACGCTGTCGCGCTCCGTTCTGGACCGGCTGCTCGATGACGC
ACCAGACGCGGAAACGGATATGCTCGTCAGTCTGAAGGATCAGGCCAGCGAGATGCGCGAGGTGATCCGCCGCGATCTCG
AGGCATTGCTCAATACCCGCCGCAACCCCGCCGGACCGCCAGCCGTATTGAAGGAATTGGCAGATGCGCTGGTGAGCTAT
GGCGTGGACGGCATTCTTTCGGCCAATCTGGTGACGGATGCCTCCAAGGCGCAGCTCGCACGCAGCATCGAGCGGCGGAT
TTCCCTGTTCGAAACCCGCCTTGCCGATGTGCATGTGACGATCCTGAAAAACCGCACGGATGGCGACCGGGCGCTTCGCA
TGCGCATACAGGCAAGCTTCCGTCTTCAGGAAGGCATGCCGCCGATCAGCTTTGAATCCCGCATCGATCCGTCCACGCAA
CGTTTCCTGGTGGAGGCGACGAATGGCTGA