Detailed information of component protein


Summary

Component ID T6CP015589
Component protein type TssE
T6SS ID (Type) T6SS01243 experimental (Type i5)
Strain Agrobacterium fabrum strain 12D13
Replicon chromosome
Sequence Protein sequence (170 a.a.); Nucleotide sequence (510 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) At12D13_RS20930
Coordinate (Strand) 1431890..1432399 (-)
NCBI ID WP_121691715.1
RefSeq NZ_CP033035
Uniprot ID UPI000EF5898E
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 1.4e-13 44..143

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-169 VVDPLEQYRARQRTLSRSVLDRLLDDAPDAETDMLVSLKDQASEMREVIRRDLEALLNTRRNPAGPPAVLKELADALVSYGVDGILSANLVTDASKAQLARSIERRISLFETRLADVHVTILKNRTDGDRALRMRIQASFRLQEGMPPISFESRIDPSTQRFLVEATNG



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9866 - -



  Protein sequence: 170 a.a.    

>T6CP015589 NZ_CP033035:c1432399-1431890 [Agrobacterium fabrum] [TssE]
VVDPLEQYRARQRTLSRSVLDRLLDDAPDAETDMLVSLKDQASEMREVIRRDLEALLNTRRNPAGPPAVLKELADALVSY
GVDGILSANLVTDASKAQLARSIERRISLFETRLADVHVTILKNRTDGDRALRMRIQASFRLQEGMPPISFESRIDPSTQ
RFLVEATNG*

  Nucleotide sequence: 510 bp    

>T6CP015589 NZ_CP033035:c1432399-1431890 [Agrobacterium fabrum] [TssE]
GTGGTTGATCCGCTGGAGCAATATCGCGCACGGCAAAGGACGCTGTCGCGCTCCGTTCTGGACCGGCTGCTCGATGACGC
ACCAGACGCGGAAACGGATATGCTCGTCAGTCTGAAGGATCAGGCCAGCGAGATGCGCGAGGTGATCCGCCGCGATCTCG
AGGCATTGCTCAATACCCGCCGCAACCCCGCCGGACCGCCAGCCGTATTGAAGGAATTGGCAGATGCGCTGGTGAGCTAT
GGCGTGGACGGCATTCTTTCGGCCAATCTGGTGACGGATGCCTCCAAGGCGCAGCTCGCACGCAGCATCGAGCGGCGGAT
TTCCCTGTTCGAAACCCGCCTTGCCGATGTGCATGTGACGATCCTGAAAAACCGCACGGATGGCGACCGGGCGCTTCGCA
TGCGCATACAGGCAAGCTTCCGTCTTCAGGAAGGCATGCCGCCGATCAGCTTTGAATCCCGCATCGATCCGTCCACGCAA
CGTTTCCTGGTGGAGGCGACGAATGGCTGA